G100533


Basic Information

Item Value
gene id G100533
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17154706 ~ 17154971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119168
TCAGCCTCCCCACTCTGTAAATATTATCACTGGATACTGAAAACCCATATCAGTCAACCACTGCTCATGTCTACATGTGGCAAATAGGAGCTACTAGCTGTAATTTTTAAGAagataaaaatttaaaacatattactaatataaactaattaaattatTCTGGTAATTACATAAACACATGTTCATTATACAAGATTCTATTAAAGGAGCACCTAATAAATGCATTAAGCATTAATTAGCATTAAGGAGATGAGGTTCCAATATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119168 True 266 lncRNA 0.30 1 17154706 17154971

Neighbor

gene id symbol gene type direction distance location
blm blm coding upstream 88887 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 170730 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 226064 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 338434 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 643727 16500760 ~ 16510979 (+)
slc28a1 LOC108263923 coding downstream 208154 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 375463 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 426912 17581883 ~ 17602174 (+)
reln reln coding downstream 606546 17761517 ~ 18188484 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 1069090 18224061 ~ 18241609 (+)
G100532 NA non-coding upstream 2474 17150953 ~ 17152232 (+)
G100495 NA non-coding upstream 64000 17087954 ~ 17090706 (+)
LOC117597540 NA non-coding upstream 115430 17038051 ~ 17039276 (+)
G100499 NA non-coding upstream 130478 17010715 ~ 17024228 (+)
G100480 NA non-coding upstream 182468 16971830 ~ 16972238 (+)
G100544 NA non-coding downstream 21187 17176158 ~ 17176370 (+)
G100846 NA non-coding downstream 835431 17990402 ~ 18068569 (+)
G101183 NA non-coding downstream 1050121 18205092 ~ 18205814 (+)
LOC117597602 NA non-coding downstream 1106752 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 1194153 18349124 ~ 18358091 (+)
rgma NA other upstream 473913 16657601 ~ 16680793 (+)
G100345 NA other upstream 553639 16600257 ~ 16601067 (+)
G100306 NA other upstream 804919 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1808560 15300482 ~ 15346146 (+)
G99341 synm other upstream 2630226 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 245455 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 334575 17489546 ~ 17493092 (+)
G101403 NA other downstream 1396475 18551446 ~ 18551724 (+)
G101419 NA other downstream 1443743 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1583372 18738343 ~ 18739998 (+)

Expression


Co-expression Network