G100648


Basic Information

Item Value
gene id G100648
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17188158 ~ 17189433 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119295
tttgaagtctctattaataaatacatcttcatactggttcactagtTGAGGGACTAGGAGTGCTATCAGTTAGTTAGTacggtagaaaaaaaaacacaagataagtgctaatttaagttcttaatgaagaggtaggtctttagtctttAGATTGTCCATGGTAAGCCCACACCTGCATACAGTGACATGATGAGATCCAAGAGTCCTCCAGAAGATCACAAGATTTTGACATGGGGAAACATCTCTGGTGATGTACAGCAgctcagttttgctgggattaagtttcagctgatgagctgctattcatgatgagatgtctgccagacatgctgagatccatacagaaacatgagtgtccaTGGGAGGAAAGAAGTGAAACAAAGTTTcctgtcatcagcatagcagtgttATGAAAACCCATGTAAGGATATAACCTCATCAAGAGAGCGGGTATGGACGGAAAACAGAAGAAGACCAAGCACTGAgtcttgtgggacaccagtggaaaGACTGCATGGaacagatgtggatcccctctaTGTCATTTTGTAAATTCCAAGATTTATGAGGATAGACAATAGAGTCTTGTAATTGACTGGCTCAAATCCTGCTAAAAGGTcatggaggatgaggactgatggCAGTTTGAATGATCTAGCAGCATGAAATTTCTCAGTGACAGGAGTCTCAACGGCAgattctgtggaatgtgccaTTTTGAAGCCAGAatggttaggatcttggagattgTTCTAGGTGAAAGCCAGTTGATTGCAGACAGTGCGTTTGAagattttataaagaaaaaggGAGACATGATACTGGTCAGTAGTTGCTTATGTCTAAGGTatctagagtgggtttcttcagtatgggaataacccttgttGTCTTCAAAGCAGTTGgcacatgaccagatgttatagATCTTTAATGTGGTCATTAAtgaatgtgtagtgtaggagtcaGGATAGGAGTGATGGTCTgacagatttttccaatctttccACTGAAGAAGGTGACAAAGTAATTCGTAGTCAGGGAGGATGGTAAAGGAGGAGGCGGCGGGCtaagaagtgaagaaaagacGATGTGGACCTAGCGAGGATCTTATGCAGAGGCTTCCATCTTTGTCTTGTAGAAGGAAGTCTTAGCAGCTGTCACATCGGATGACAACTTGGACAGGATGTCTCTCCTAGTTCTCCCATCAGTTCATTGTACAATGGTTGCCAAAACACATAACACCAAAAGTTTTTGGGACCTTTTGACATCGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119295 True 1276 lncRNA 0.42 1 17188158 17189433

Neighbor

gene id symbol gene type direction distance location
LOC117597525 NA coding downstream 243728 16938891 ~ 16944430 (-)
chd2 chd2,LOC107690375,LOC107715217 coding downstream 447087 16680922 ~ 16741071 (-)
LOC113534689 NA coding downstream 577848 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 1104545 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1688906 15486013 ~ 15499252 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 232928 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 531112 17720545 ~ 17725320 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 1093186 18282619 ~ 18524226 (-)
znf710a znf710 coding upstream 1544994 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 2120455 19309888 ~ 19333430 (-)
G100629 NA non-coding downstream 36980 17150897 ~ 17151178 (-)
G100604 NA non-coding downstream 72824 17115115 ~ 17115334 (-)
G100408 NA non-coding downstream 254336 16920567 ~ 16933822 (-)
LOC117597576 NA non-coding downstream 348049 16838916 ~ 16840109 (-)
G100444 NA non-coding downstream 362559 16825204 ~ 16825599 (-)
G100663 NA non-coding upstream 59745 17249178 ~ 17264409 (-)
LOC113539580 NA non-coding upstream 156196 17345629 ~ 17354761 (-)
G100727 NA non-coding upstream 217657 17407090 ~ 17407386 (-)
G100735 NA non-coding upstream 266619 17456052 ~ 17457045 (-)
G100739 NA non-coding upstream 303979 17493412 ~ 17493623 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1830595 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2841150 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3625584 13550680 ~ 13562574 (-)
G98770 NA other downstream 4135847 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4764180 12420437 ~ 12423978 (-)
G101178 NA other upstream 998014 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 2790636 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3206433 20395866 ~ 20416574 (-)
G102566 NA other upstream 3764169 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 3805908 20995341 ~ 21013100 (-)

Expression


Co-expression Network