LOC113539654


Basic Information

Item Value
gene id LOC113539654
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17489546 ~ 17493092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119380
TGCAACAAATTACGGCGCGCTAGACTCGATACAACTCTGGACTcgaaaataatgtaataatttggCGATATTTAGCTGGGGTTACTAACCGCAGCGTAAAAAGGAAAGTCGCCCCAAACAAGAAAGGAgaccaagaaaagaaaagcagaagttTTAATACCAAGTGGCAAACTGGGCACGAATGGCTCGTCTGTGACTCCACAAATCAGATAATGTACTGTGAGGTACAACTTCAAACTTCTCTTTCGAAACGCTCATGCTGTGGCGAAAAAAGACCGTGGTTTCAGGAAGCGCGGCTGGATTAACCGCAGGGAAAAAAGGGAGACCCTTCTCGGATTTCACATGGATGTaCTTTGGAGACACTGACGTGGAAGAGCTCACACATCATTTCAAGCCTCTTCTCATGTCAGCTGGAGTGGATGTTGACTTGATCCCGGATCAATGGACTGTACTAAAGTCACGACTGTACCAGCAAATGGGGCCCTTAGAGAAGATAACCTGACCTGCTGTGAACAGGATGCTGGGCCACGAGTGTCCTGATATTCTTCAACTTTTTGACCTCATACTTGCCATCCCATCATCTTCTGCTGACTGTGAACAAGGTTTTAGTTTAATGAAGTTGGTGGCCTGCAAGACTGAAGGTTGAGACGCTCTGTGACCTTCTTACTGTCCAGCTAAACTCTCCTGATATCATGCACTTTGATCCCAACAATGCCATTGATATATGGCATGCAGAGAGTTTACGCTCCCGCAGACCAGAGTTCACATGCAAAGACCGAGCTGAAAAACAGCACTTCCTTAGTGACACAGTGGACTCTGAGGATGAGAGCTCTGAGGACCTCTGAGCATTTGTTTAAGCGAA
>XM_026935606.2
TCAGACTTGATGAGCATaagtgacttttttaaaaaaaaacattaaaaatagtaATATGTCCAAACTTTCAACCAGTACTATATACATGGTTATCTTTGTTAAACACTGAATATGTTCAGtaatttttacttgttttatgaCAGTTTAGACTTGACAGTCAGAAAGGTTTAGATGTAGGGAAAACATACAGGAATGTCAATCAAGCAAAGCTATTCAAGCACTGCATAGcggaggaagagagaagaaagataAGGGAGAGTGTGTCCACTGCGAAATTCATCTCTGTGATGACAAATGGATCTGTAGACTCTTCAGTTACAGAAGAGGAGATGGTGTACGTAAGGACCGCAAAGGCTGGGCAGGTCAGAGTTTATTTTGCTGGTGTTCAGGCAGTCTCTAGGCCAGACGCCAGCCACATTGCTGAGGCAGTGAGTAGCATTATGGACAGCATATCAGGCAATAGCACTCGGTGGAAGAGAAAACTTGTAGCCATAACCACAGATGGAGCTGCGGTGATGACTGGTGAGAAGAACGGTGTGGTCACAAGAATCCGGGGAGACAGGTCTTATGTGTTGGGCATCCATTGCATGGCCCATAGGCCTGAGCTAGCTTACGCTGATGCAGTGAAACAAAGTCTGATGGCTAGGAAGGTTGAAGACCTAATGACTGGTCTTTATACTTTGTACCACAAGAGCTCAGTAAACAGAGATAGTCTCAAGGCAAGCTTTGAGGAGCTCAACATGAAGCCCTTGATTCCAACCAGAATTGGTGGAACCCGGTGGGTGGCACACATCCTCAGGGCTTTAGACCATTTCCTGAGAGGCTATGCAGGAATTACACATCAGTTGGAAAAGACAATGCAGACTGATGTCAAACTTAAGGCCAAGGCCAAAGGATTCCTTAATATCATCAATGATGGTACACTTGTAAAGTTCTCCTGCCTCCTGTATGACATTTTGACACACCTCAGCAACCTGTCAGTCACCCTGCAGAAGTCATTAGTGACTTTGGCTGAGGCTCAAAGCTGCCTCTCTTCCACTCAGGCAGTTTTAAAGAAGTATAAGTCAAGACTGGGGCCTAAGTTGAGGTCAGTGCTGGAAGCTGATACATATGAGAACGTCCACCTGAAGCCTCCTAATGCTGAACAGCTGGATATGGCCAAGAAACAGGTTATAGATTCTCTGTGCCAGTGCCTCACTAAAAGACTTGGGGATGTAAGCAGTGTTGTCCTGAAGGCTATGCGACTGATCAGTTTCCAATGCTGGCCAGATGCAGACATGAGTACAGaCTTTGGAGACACTGACGTGGAAGAGCTCACACATCATTTCAAGCCTCTTCTCATGTCAGCTGGAGTGGATGTTGACTTGATCCCGGATCAATGGACTGTACTAAAGTCACGACTGTACCAGCAAATGGGGCCCTTAGAGAAGATAACCTGACCTGCTGTGAACAGGATGCTGGGCCACGAGTGTCCTGATATTCTTCAACTTTTTGACCTCATACTTGCCATCCCATCATCTTCTGCTGACTGTGAACAAGGTTTTAGTTTAATGAAGTTGGTGGCCTGCAAGACTGAAGGTTGAGACGCTCTGTGACCTTCTTACTGTCCAGCTAAACTCTCCTGATATCATGCACTTTGATCCCAACAATGCCATTGATATATGGCATGCAGAGAGTTTACGCTCCCGCAGACCAGAGTTCACATGCAAAGACCGAGCTGAAAAACAGCACTTCCTTAGTGACACAGTGGACTCTGAGGATGAGAGCTCTGAGGACCTCTGAGCATTTGTTTAAGCGAAATTcagattttataataaataataataaaatatgtaataaatgtttataaataaagatgtgACATGGTTAATCTGGTTATGGACATCTGA
>XR_003403945.2
AGAAGTCATGCAAGCCCAAACCATGACACCACCTCTACCCTGCTTGACCCATGAGCTCatttgttttggatcatgagcaggtcCTTTCATTCTCTACACTTTAGCTATTTTAATACAGTGAGTTTCTGCAGGTGATTCAGTAAACCCCCATAACCaccttcaaaataaaatattttgtaattcacagaaaaaaattaagtaaataaatacaaaaatattaaagtgcTCATCACCCTTTGATGTTATTtacactttggcctttctatTATTTTGGtggaggttaatcttggttccagaactttagTGGCTCATCtatgtatttctttgcaaattccaatctagCCATCCGATTCTTACTACTGATGAGAGGTTTGAATCTCGTGGTATGGTATTCAGGGTTTGAAATCATCAAATCACTAGCCAATCTGGCGGGTTATAAATAATGTGCACTCGTTAATTTCCTGGTAAAGCTCATGTAAGCCAAATCTGCGCAGTTTTAGCGCAAATACGCAACTCGTGAGCCATAATGGTATACTAAATACAACATTATTGCGCAGAATGTGCGCATATCTGGCTTACTTGAACACACCCGTCAACAAATGCAACAAATTACGGCGCGCTAGACTCGATACAACTCTGGACTcgaaaataatgtaataatttggCGATATTTAGCTGGGGTTACTAACCGCAGCGTAAAAAGGAAAGTCGCCCCAAACAAGAAAGGAgaccaagaaaagaaaagcagaagttTTAATACCAAGTGGCAAACTGGGCACGAATGGCTCGTCTGTGACTCCACAAATCAGATAATGTACTGTGAGGTACAACTTCAAACTTCTCTTTCGAAACGCTCATGCTGTGGCGAAAAAAGACCGTGGTTTCAGGAAGCGCGGCTGGATTAACCGCAGGGAAAAAAGGGAGACCCTTCTCGGATTTCACATGGATGTGTGAaCTTTGGAGACACTGACGTGGAAGAGCTCACACATCATTTCAAGCCTCTTCTCATGTCAGCTGGAGTGGATGTTGACTTGATCCCGGATCAATGGACTGTACTAAAGTCACGACTGTACCAGCAAATGGGGCCCTTAGAGAAGATAACCTGACCTGCTGTGAACAGGATGCTGGGCCACGAGTGTCCTGATATTCTTCAACTTTTTGACCTCATACTTGCCATCCCATCATCTTCTGCTGACTGTGAACAAGGTTTTAGTTTAATGAAGTTGGTGGCCTGCAAGACTGAAGGTTGAGACGCTCTGTGACCTTCTTACTGTCCAGCTAAACTCTCCTGATATCATGCACTTTGATCCCAACAATGCCATTGATATATGGCATGCAGAGAGTTTACGCTCCCGCAGACCAGAGTTCACATGCAAAGACCGAGCTGAAAAACAGCACTTCCTTAGTGACACAGTGGACTCTGAGGATGAGAGCTCTGAGGACCTCTGAGCATTTGTTTAAGCGAAATTcagattttataataaataataataaaatatgtaataaatgtttataaataaagatgtgACATGGTTAATCTGGTTATGGACATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119380 False 862 lncRNA 0.46 2 17490146 17493002
XM_026935606.2 True 1889 mRNA 0.44 4 17490869 17493092
XR_003403945.2 False 1556 misc_RNA 0.41 2 17489546 17493092

Neighbor

gene id symbol gene type direction distance location
slc28a1 LOC108263923 coding upstream 111206 17363125 ~ 17378340 (+)
blm blm coding upstream 423727 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 505570 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 560904 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 673274 16764695 ~ 16816272 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 37342 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 88791 17581883 ~ 17602174 (+)
reln reln coding downstream 268425 17761517 ~ 18188484 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 730969 18224061 ~ 18241609 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 1188425 18681517 ~ 18732814 (+)
G100544 NA non-coding upstream 313176 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 334575 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 337314 17150953 ~ 17152232 (+)
G100495 NA non-coding upstream 398840 17087954 ~ 17090706 (+)
LOC117597540 NA non-coding upstream 450270 17038051 ~ 17039276 (+)
G100846 NA non-coding downstream 497310 17990402 ~ 18068569 (+)
G101183 NA non-coding downstream 712000 18205092 ~ 18205814 (+)
LOC117597602 NA non-coding downstream 768631 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 856032 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 1043809 18536901 ~ 18537109 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 46078 17400426 ~ 17443468 (+)
rgma NA other upstream 808753 16657601 ~ 16680793 (+)
G100345 NA other upstream 888479 16600257 ~ 16601067 (+)
G100306 NA other upstream 1139759 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 2143400 15300482 ~ 15346146 (+)
G101403 NA other downstream 1058354 18551446 ~ 18551724 (+)
G101419 NA other downstream 1105622 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1245251 18738343 ~ 18739998 (+)
G101466 NA other downstream 1300543 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 1464336 18957428 ~ 19122497 (+)

Expression


Co-expression Network