G100846


Basic Information

Item Value
gene id G100846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17990402 ~ 18068569 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119517
TGGGAttgttgttctttctttatttcatttaatgagtcagagtcagagtttTCATGCCTGAGTTATTGTAGTAGGAATtgtgttttttccatttatgaGGTCATTGTATTCTAGTTTGAGTTTCCTTAATTCCTTTTCTGTGCTTTCTGTGGGGTTGGTCTCtctaatttcattttcagtactttcatttttcttatatAAGACTTTGGGCATGTGAGCTCTTAAAGTGGTTGGGAGAGATCAAGGGGGCTATTTTATGTAGGTAAACCATCAtgacatgtgaCTTCttaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119517 True 294 lncRNA 0.35 2 17990402 18068569

Neighbor

gene id symbol gene type direction distance location
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 388228 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 448749 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 612062 17363125 ~ 17378340 (+)
blm blm coding upstream 924583 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 1006426 16978935 ~ 16983976 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 155492 18224061 ~ 18241609 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 612948 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 1091417 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 1210581 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 1226923 19295492 ~ 19308801 (+)
G100544 NA non-coding upstream 814032 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 835431 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 838170 17150953 ~ 17152232 (+)
G100495 NA non-coding upstream 899696 17087954 ~ 17090706 (+)
LOC117597540 NA non-coding upstream 951126 17038051 ~ 17039276 (+)
G101183 NA non-coding downstream 136523 18205092 ~ 18205814 (+)
LOC117597602 NA non-coding downstream 193154 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 280555 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 468332 18536901 ~ 18537109 (+)
G101388 NA non-coding downstream 469017 18537586 ~ 18537809 (+)
LOC113539654 NA other upstream 497310 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 546934 17400426 ~ 17443468 (+)
rgma NA other upstream 1309609 16657601 ~ 16680793 (+)
G100345 NA other upstream 1389335 16600257 ~ 16601067 (+)
G100306 NA other upstream 1640615 16349457 ~ 16349787 (+)
G101403 NA other downstream 482877 18551446 ~ 18551724 (+)
G101419 NA other downstream 530145 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 669774 18738343 ~ 18739998 (+)
G101466 NA other downstream 725066 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 888859 18957428 ~ 19122497 (+)

Expression


Co-expression Network