LOC117597602


Basic Information

Item Value
gene id LOC117597602
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18261723 ~ 18277823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119876
CCCTAGTTGGGCTGGTTTAGCCAAACTGCTTAAAAACCTTATGGCCAAGCAAATCATTGAACTGGAAGAACCCCAAGGCTGTCTTCATTGGCATCATCCGGCTCATCTCTTTGCTCGGCTGTCCAGTCTCCATCCACTCTCTCCGTCGACAGTGAATTACTTCCCCAAAATTCTACAACTCCAAGGAAGCTATTACTGTCGATACTGAGGAGCAAGGAGACACagccctgatcagagCAGTGACGCCAAGGAATACCTCGTGCTGAGGCCCATCTCTGCAACCCCAGACTGCCACCAACGACCACCCTGACCCACACCTGCACTTCCATGCCTCCCTCTTTCATCTGCaccttattctttttttctaaaataaacacaaaccttGGCACTTATTT
>XR_004578365.1
TCTTTGGTTGGCTGAAACCCCTAGTTGGGCTGGTTTAGCCAAACTGCTTAAAAACCTTATGGCCAAGCAAATCATTGAACTGGAAGAACCCCAAGGCTGTCTTCATTGGCATCATCCGGCTCATCTCTTTGCTCGGCTGTCCAGTCTCCATCCACTCTCTCCGTCGACAGTGAATTACTTCCCCAAAATTCTACAACTCCAAGGAAGCTATTACTGTCGATACTGAGGAGCAAGGAGACACagccctgatcagaggccagtaACAGCAGTGACGCCAAGGAATACCTCGTGCTGAGGCCCATCTCTGCAACCCCAGACTGCCACCAACGACCACCCTGACCCACACCTGCACTTCCATGCCTCCCTCTTTCATCTGCaccttattctttttttctaaaataaacacaaaccttGGCACTTA

Function

GO: NA

KEGG:

id description
ko04330 Notch signaling pathway
ko05224 Breast cancer
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU119876 False 395 lncRNA 0.49 2 18261741 18277823
XR_004578365.1 True 421 lncRNA 0.49 2 18261723 18277820

Neighbor

gene id symbol gene type direction distance location
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 20114 18224061 ~ 18241609 (+)
reln reln coding upstream 73239 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 659549 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 720070 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 883383 17363125 ~ 17378340 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 403694 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 882163 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 1001327 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 1017669 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 1076303 19354126 ~ 19360323 (+)
G101183 NA non-coding upstream 55909 18205092 ~ 18205814 (+)
G100846 NA non-coding upstream 193154 17990402 ~ 18068569 (+)
G100544 NA non-coding upstream 1085353 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 1106752 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 1109491 17150953 ~ 17152232 (+)
LOC117597601 NA non-coding downstream 71301 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 259078 18536901 ~ 18537109 (+)
G101388 NA non-coding downstream 259763 18537586 ~ 18537809 (+)
LOC117597609 NA non-coding downstream 267349 18545172 ~ 18545666 (+)
LOC117597608 NA non-coding downstream 270102 18547925 ~ 18548289 (+)
LOC113539654 NA other upstream 768631 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 818255 17400426 ~ 17443468 (+)
rgma NA other upstream 1580930 16657601 ~ 16680793 (+)
G100345 NA other upstream 1660656 16600257 ~ 16601067 (+)
G100306 NA other upstream 1911936 16349457 ~ 16349787 (+)
G101403 NA other downstream 273623 18551446 ~ 18551724 (+)
G101419 NA other downstream 320891 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 460520 18738343 ~ 18739998 (+)
G101466 NA other downstream 515812 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 679605 18957428 ~ 19122497 (+)

Expression


Co-expression Network