LOC117597601


Basic Information

Item Value
gene id LOC117597601
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18349124 ~ 18358091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119923
TCATTCAACACATCTTCAGAAGTCTCtaccaacatcttcaaggagCTCTCTTCCATCAACATCTGCAGGATTCCCATTCTCAATCTTCAGAGTTCGTGTCACCTAACTACTCCAGGAGAGTtctcttcaactaacagctcaagaAGTTCTTGCCCCTCGTCATCACAAGGAGATGttcatcgtcatcgtcatcaCACATCCGAGACTCCACATCCAGCCTGGTTCCTGCAGAGCCTCCAACTCCCGTCTTTGCACCGCTGTGAACCACtcatcaaagttttgcaacctgCCTAAGAGACTCCGCCAGGTCCGCACCTCATTCTGTTTATGAgcctcattggtctttcgagacgctaTATAAGGACAACTagaccgccgaccaatcaacattGCCGAAAACCCCTCTAAACAACaacgcaacgagggaatccctggcaacacaaacgAGAAATACAAGAAGCCTGCCAAGACACATCATTCCTCGGATCACTAATCACATCTGAGCTTTTGACATTAATCCTTTGACACACTAATTGCATCTGAGCAATTCCCTCTCTGCCCCAGCACGCCTCGGAACATGTGAGACGGCCAAAGCAACTCCCTACGACATGCGCAAaagctctactgtgggatcagaccagatggtcTAGCCTTCGCTCTCCACTCACAttaatgagccttgggtgcccatgaccatGAAGCCAGTTCACCTGttttcttccttggaccacttttgtctaGCAGGTGCAGTAATGAAATGCGGCAAAGATGCACCCGAGGAGATCAAACAGCATGCTTTGGAGCAACTTAAGCATGCACCAGTGAGAAAGGGGGACACACACAATGAACTTTAAAGAACTTTTTCTATAATAAACGCGACATGGTCGTATGAGTTCTGAAGCGTATGCTCTAGGTGGATCGTTTATTTGTTAATTGTTATCCACTGCAGCTTGAGTTAAGTTTCACTTTTGTTTTCATGAgttttggacacacacacattgtctgtAGAGTTGCT
>XR_004578361.1
CTCATTCAACACATCTTCAGAAGTCTCtaccaacatcttcaaggagCTCTCTTCCATCAACATCTGCAGGATTCCCATTCTCAATCTTCAGAGTTCGTGTCACCTAACTACTCCAGGAGAGTtctcttcaactaacagctcaagaAGTTCTTGCCCCTCGTCATCACAAGGAGATGttcatcgtcatcgtcatcaCACATCCGAGACTCCACATCCAGCCTGGTTCCTGCAGAGCCTCCAACTCCCGTCTTTGCACCGCTGTGAACCACtcatcaaagttttgcaacctgCCTAAGAGACTCCGCCAGGTCCGCACCTCATTCTGTTTATGAgcctcattggtctttcgagacgctaTATAAGGACAACTagaccgccgaccaatcaacattGCCGAAAACCCCTCTAAACAACaacgcaacgagggaatccctggcaacacaaacgcaaGTTCACATCTCACCCTACCTGCCTGCCTGCACTCTGCTATGCCCAGCCCTGATTCACCTCCCCTGTGGTCCACAGACAGAGTATCTGATTCCTATGCTGCTGACCCGAGATTGAGATCTGACCTTAACAGTAACACTAGCCACGCTTGCACTCCGCAACTCCCAGCCTTGTTTCACCATCCACATGGCTAGGTGACAAAAACACTCATAGGCCCTAACAGCCCAATCCTGACGTTTCCTGTGAGACGAGACCAGGGAGGACAACCAACTGAGGACACAGAACTTCTAATAGCAACTTAGGATGGGACAGATCATGAGGATTATCTAGACATGTGTCATGCACAGAACTGCCCTTAAAGAGTATCAGAGGTGGAATTGAAGGAAATATAGTGCCTCCAAAAAgAGAAATACAAGAAGCCTGCCAAGACACATCATTCCTCGGATCACTAATCACATCTGAGCTTTTGACATTAATCCTTTGACACACTAATTGCATCTGAGCAATTCCCTCTCTGCCCCAGCACGCCTCGGAACATGTGAGACGGCCAAAGCAACTCCCTACGACATGCGCAAaagctctactgtgggatcagaccagatggtcTAGCCTTCGCTCTCCACTCACAttaatgagccttgggtgcccatgaccatGAAGCCAGTTCACCTGttttcttccttggaccacttttgtctaGCAGGTGCAGTAATGAAATGCGGCAAAGATGCACCCGAGGAGATCAAACAGCATGCTTTGGAGCAACTTAAGCATGCACCAGTGAGAAAGGGGGACACACACAATGAACTTTAAAGAACTTTTTCTATAATAAACGCGACATGGTCGTATGAGTTCTGAAGCGTATGCTCTAGGTGGATCGTTTATTTGTTAATTGTTATCCACTGCAGCTTGAGTTAAGTTTCACTTTTGTTTTCATGAgttttggacacacacacattgtctgtAGAGTTGCTTTGCAATTACAAATGAAAAGTACATTGAAATAAAAGTGAGTTTTAACTGAATG
>XR_004578362.1
CTCATTCAACACATCTTCAGAAGTCTCtaccaacatcttcaaggagCTCTCTTCCATCAACATCTGCAGGATTCCCATTCTCAATCTTCAGAGTTCGTGTCACCTAACTACTCCAGGAGAGTtctcttcaactaacagctcaagaAGTTCTTGCCCCTCGTCATCACAAGGAGATGttcatcgtcatcgtcatcaCACATCCGAGACTCCACATCCAGCCTGGTTCCTGCAGAGCCTCCAACTCCCGTCTTTGCACCGCTGTGAACCACtcatcaaagttttgcaacctgCCTAAGAGACTCCGCCAGGTCCGCACCTCATTCTGTTTATGAgcctcattggtctttcgagacgctaTATAAGGACAACTagaccgccgaccaatcaacattGCCGAAAACCCCTCTAAACAACaacgcaacgagggaatccctggcaacacaaacgcaaGTTCACATCTCACCCTACCTGCCTGCCTGCACTCTGCTATGCCCAGCCCTGATTCACCTCCCCTGTGGTCCACAGACAGAGTATCTGATTCCTATGCTGCTGACCCGAGATTGAGATCTGACCTTAACAGTAACACTAGCCACGCTTGCACTCCGCAACTCCCAGCCTTGTTTCACCATCCACATGGCTAGGTGACAAAAACACTCATAGGCCCTAACAGCCCAATCCTGACGTTTCCTGTGAGACGAGACCAGGGAGGACAACCAACTGAGGACACAGAACTTCTAATAGCAACTTAGGATGGGACAGATCATGAGGATTATCTAGACATGTGTCATGCACAGAACTGCCCTTAAAGAGTATCAGAGGTGGAATTGAAGGAAATATAGTGCCTCCAAAAAgAGAAATACAAGAAGCCTGCCAAGACACATCATTCCTCGGATCACTAATCACATCTGAGCTTTTGACATTAATCCTTTGACACACTAATTGCATCTGAGCAATTCCCTCTCTGCCCCAGCACGCCTCGGAACATGTGAGACGGCCAAAGCAACTCCCTACGACATGCGCAAaagctctactgtgggatcagaccagatggtcTAGCCTTCGCTCTCCACTCACAttaatgagccttgggtgcccatgaccatGAAGCCAGTTCACCTGttttcttccttggaccacttttgTTCTGCGTGTTTGTCCAAGTAGTGCTGCCAGCGGACACATGCACGTATGCACTACTCAGAGGGAGCAGTGACTCATTCAAGAGCCTCACTGCTTGCAATACATGTGATGTGCTGCTCTTGCAAAGACTATGTTACAGCAAGGCAAAAGTGCAAATTGATCAAGCTAGTTGAACACACCTAAGtctaGCAGGTGCAGTAATGAAATGCGGCAAAGATGCACCCGAGGAGATCAAACAGCATGCTTTGGAGCAACTTAAGCATGCACCAGTGAGAAAGGGGGACACACACAATGAACTTTAAAGAACTTTTTCTATAATAAACGCGACATGGTCGTATGAGTTCTGAAGCGTATGCTCTAGGTGGATCGTTTATTTGTTAATTGTTATCCACTGCAGCTTGAGTTAAGTTTCACTTTTGTTTTCATGAgttttggacacacacacattgtctgtAGAGTTGCTTTGCAATTACAAATGAAAAGTACATTGAAATAAAAGTGAGTTTTAACTGAATGCAGCTTGAAACTGTTTATTTGGTCCAGAAGC
>XR_004578363.1
CTCATTCAACACATCTTCAGAAGTCTCtaccaacatcttcaaggagCTCTCTTCCATCAACATCTGCAGGATTCCCATTCTCAATCTTCAGAGTTCGTGTCACCTAACTACTCCAGGAGAGTtctcttcaactaacagctcaagaAGTTCTTGCCCCTCGTCATCACAAGGAGATGttcatcgtcatcgtcatcaCACATCCGAGACTCCACATCCAGCCTGGTTCCTGCAGAGCCTCCAACTCCCGTCTTTGCACCGCTGTGAACCACtcatcaaagttttgcaacctgCCTAAGAGACTCCGCCAGGTCCGCACCTCATTCTGTTTATGAgcctcattggtctttcgagacgctaTATAAGGACAACTagaccgccgaccaatcaacattGCCGAAAACCCCTCTAAACAACaacgcaacgagggaatccctggcaacacaaacgcaaGTTCACATCTCACCCTACCTGCCTGCCTGCACTCTGCTATGCCCAGCCCTGATTCACCTCCCCTGTGGTCCACAGACAGAGTATCTGATTCCTATGCTGCTGACCCGAGATTGAGATCTGACCTTAACAGTAACACTAGCCACGCTTGCACTCCGCAACTCCCAGCCTTGTTTCACCATCCACATGGCTAGGTGACAAAAACACTCATAGGCCCTAACAGCCCAATCCTGACGTTTCCTGTGAGACGAGACCAGGGAGGACAACCAACTGAGGACACAGAACTTCTAATAGCAACTTAGGATGGGACAGATCATGAGGATTATCTAGACATGTGTCATGCACAGAACTGCCCTTAAAGAGTATCAGAGGTGGAATTGAAGGAAATATAGTGCCTCCAAAAAgAGAAATACAAGAAGCCTGCCAAGACACATCATTCCTCGGATCACTAATCACATCTGAGCTTTTGACATTAATCCTTTGACACACTAATTGCATCTGAGCAATTCCCTCTCTGCCCCAGCACGCCTCGGAACATGTGAGACGGCCAAAGCAACTCCCTACGACATGCGCAAaagctctactgtgggatcagaccagatggtcTAGCCTTCGCTCTCCACTCACAttaatgagccttgggtgcccatgaccatGAAGCCAGTTCACCTGttttcttccttggaccacttttgAAATGCTCACAGTGATGAACTATCTAGACGATGCTAACAGTCTTCCAAAAACTATATGGGGCATCAACCGACTGTGGATTTAACAGTTCTGCGTGTTTGTCCAAGTAGTGCTGCCAGCGGACACATGCACGTATGCACTACTCAGAGGGAGCAGTGACTCATTCAAGAGCCTCACTGCTTGCAATACATGTGATGTGCTGCTCTTGCAAAGACTATGTTACAGCAAGGCAAAAGTGCAAATTGATCAAGCTAGTTGAACACACCTAAGtctaGCAGGTGCAGTAATGAAATGCGGCAAAGATGCACCCGAGGAGATCAAACAGCATGCTTTGGAGCAACTTAAGCATGCACCAGTGAGAAAGGGGGACACACACAATGAACTTTAAAGAACTTTTTCTATAATAAACGCGACATGGTCGTATGAGTTCTGAAGCGTATGCTCTAGGTGGATCGTTTATTTGTTAATTGTTATCCACTGCAGCTTGAGTTAAGTTTCACTTTTGTTTTCATGAgttttggacacacacacattgtctgtAGAGTTGCTTTGCAATTACAAATGAAAAGTACATTGAAATAAAAGTGAGTTTTAACTGAATGCAGCTTGAAACTGTTTATTTGGTCCAGAAGCAGTA
>XR_004578364.1
CTCATTCAACACATCTTCAGAAGTCTCtaccaacatcttcaaggagCTCTCTTCCATCAACATCTGCAGGATTCCCATTCTCAATCTTCAGAGTTCGTGTCACCTAACTACTCCAGGAGAGTtctcttcaactaacagctcaagaAGTTCTTGCCCCTCGTCATCACAAGGAGATGttcatcgtcatcgtcatcaCACATCCGAGACTCCACATCCAGCCTGGTTCCTGCAGAGCCTCCAACTCCCGTCTTTGCACCGCTGTGAACCACtcatcaaagttttgcaacctgCCTAAGAGACTCCGCCAGGTCCGCACCTCATTCTGTTTATGAgcctcattggtctttcgagacgctaTATAAGGACAACTagaccgccgaccaatcaacattGCCGAAAACCCCTCTAAACAACaacgcaacgagggaatccctggcaacacaaacgcaaGTTCACATCTCACCCTACCTGCCTGCCTGCACTCTGCTATGCCCAGCCCTGATTCACCTCCCCTGTGGTCCACAGACAGAGTATCTGATTCCTATGCTGCTGACCCGAGATTGAGATCTGACCTTAACAGTAACACTAGCCACGCTTGCACTCCGCAACTCCCAGCCTTGTTTCACCATCCACATGGCTAGGTGACAAAAACACTCATAGGCCCTAACAGCCCAATCCTGACGTTTCCTGTGAGACGAGACCAGGGAGGACAACCAACTGAGGACACAGAACTTCTAATAGCAACTTAGGATGGGACAGATCATGAGGATTATCTAGACATGTGTCATGCACAGAACTGCCCTTAAAGAGTATCAGAGGTGGAATTGAAGGAAATATAGTGCCTCCAAAAAgAGAAATACAAGAAGCCTGCCAAGACACATCATTCCTCGGATCACTAATCACATCTGAGCTTTTGACATTAATCCTTTGACACACTAATTGCATCTGAGCAATTCCCTCTCTGCCCCAGCACGCCTCGGAACATGTGAGACGGCCAAAGCAACTCCCTACGACATGCGCAAaagctctactgtgggatcagaccagatggtcTAGCCTTCGCTCTCCACTCACAttaatgagccttgggtgcccatgaccatGAAGCCAGTTCACCTGttttcttccttggaccacttttgAAATGCTCACAGTGATGAACTATCTAGACGATGCTAACAGTCTTCCAAAAACTATATGGGGCATCAACCGACTGTGGATTTAACAGtctaGCAGGTGCAGTAATGAAATGCGGCAAAGATGCACCCGAGGAGATCAAACAGCATGCTTTGGAGCAACTTAAGCATGCACCAGTGAGAAAGGGGGACACACACAATGAACTTTAAAGAACTTTTTCTATAATAAACGCGACATGGTCGTATGAGTTCTGAAGCGTATGCTCTAGGTGGATCGTTTATTTGTTAATTGTTATCCACTGCAGCTTGAGTTAAGTTTCACTTTTGTTTTCATGAgttttggacacacacacattgtctgtAGAGTTGCTTTGCAATTACAAATGAAAAGTACATTGAAATAAAAGTGAGTTTTAACTGAATGCAGCTTGAAACTGTTTATTTGGTCCAG

Function

GO: NA

KEGG:

id description
ko05224 Breast cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU119923 False 1015 lncRNA 0.47 4 18349125 18358003
XR_004578361.1 False 1474 lncRNA 0.47 5 18349124 18358056
XR_004578362.1 False 1687 lncRNA 0.46 6 18349124 18358087
XR_004578363.1 True 1777 lncRNA 0.46 7 18349124 18358091
XR_004578364.1 False 1587 lncRNA 0.46 6 18349124 18358083

Neighbor

gene id symbol gene type direction distance location
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 107515 18224061 ~ 18241609 (+)
reln reln coding upstream 160640 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 746950 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 807471 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 970784 17363125 ~ 17378340 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 323426 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 801895 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 921059 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 937401 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 996035 19354126 ~ 19360323 (+)
LOC117597602 NA non-coding upstream 71301 18261723 ~ 18277823 (+)
G101183 NA non-coding upstream 143310 18205092 ~ 18205814 (+)
G100846 NA non-coding upstream 280555 17990402 ~ 18068569 (+)
G100544 NA non-coding upstream 1172754 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 1194153 17154706 ~ 17154971 (+)
G101387 NA non-coding downstream 178810 18536901 ~ 18537109 (+)
G101388 NA non-coding downstream 179495 18537586 ~ 18537809 (+)
LOC117597609 NA non-coding downstream 187081 18545172 ~ 18545666 (+)
LOC117597608 NA non-coding downstream 189834 18547925 ~ 18548289 (+)
G101402 NA non-coding downstream 190954 18549045 ~ 18549253 (+)
LOC113539654 NA other upstream 856032 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 905656 17400426 ~ 17443468 (+)
rgma NA other upstream 1668331 16657601 ~ 16680793 (+)
G100345 NA other upstream 1748057 16600257 ~ 16601067 (+)
G100306 NA other upstream 1999337 16349457 ~ 16349787 (+)
G101403 NA other downstream 193355 18551446 ~ 18551724 (+)
G101419 NA other downstream 240623 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 380252 18738343 ~ 18739998 (+)
G101466 NA other downstream 435544 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 599337 18957428 ~ 19122497 (+)

Expression


Co-expression Network