G101411


Basic Information

Item Value
gene id G101411
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18568998 ~ 18569765 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120096
TGAATGTGCACATCTGCTTGGATCATGAAATCTGTGCCCAAAAGGATGGGGCATGACAGGTCCGGAATAACAGCAAAACGATGAGTGAACAAGTGACCCAGCAGTCTCACGGGCAGCCAAACAATGCCTGAAGGAGTGCACTGTTGTGAGTCAGCTAACTCAAGAGGGGAGAAAGTCCACGGGAGAACAATATCCCCATTTACTCCACATTTAAGAAGGGTTGATGGATGGACCGCTGAAATGGATGCACCAGTGTCCAGTGTTGCATTCAGAGAAACCTGGTTGACCATTATCATTGATGTCAAGGGAGAGTTCTTAGTCTTCCTAGGGCTGTCCCTTACTAAATTAACTGAGTGAGGGCCCTCTGCCCTCTGAACGCTGGGCCCTGGTTCCCCTTTTCGGTTATCACCCCGAGTATTCTGAAACCTATGTGGTCGTACACCCCTGTTATCCCTGGTGTCTTCTGGAGTGATTGTAGGCCCTTGACCTGACTGAAGATTCCCTGGTGCCCTTCCACTAGGTTCTGTGATTCCGCTCTGCCTAGTTTTCTTACAGTTTCCACAATTACGCACTGTGACTCCGGGGGCGAAACATTTGTAGCACTGTAAGCTCGGCCGTTGGGTTAGCTGAGCCGGAGCGGAAGTCCTGCTAGGGGAGATAGGCCCCAAGGCAGTGTGTAGTTCATGGGCACTTAAGAGCAGTTGGGTTAAAGTTGTGGGTGCGGCTGCATGGAGGGCTAGTCTATATTGATCTGAGACATGTCGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120096 True 768 lncRNA 0.51 1 18568998 18569765

Neighbor

gene id symbol gene type direction distance location
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 327389 18224061 ~ 18241609 (+)
reln reln coding upstream 380514 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 966824 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1027345 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 1190658 17363125 ~ 17378340 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 111752 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 590221 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 709385 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 725727 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 784361 19354126 ~ 19360323 (+)
G101402 NA non-coding upstream 19745 18549045 ~ 18549253 (+)
LOC117597608 NA non-coding upstream 20709 18547925 ~ 18548289 (+)
LOC117597609 NA non-coding upstream 23332 18545172 ~ 18545666 (+)
G101388 NA non-coding upstream 31189 18537586 ~ 18537809 (+)
G101387 NA non-coding upstream 31889 18536901 ~ 18537109 (+)
G101417 NA non-coding downstream 27726 18597491 ~ 18597706 (+)
G101422 NA non-coding downstream 32157 18601922 ~ 18602186 (+)
G101436 NA non-coding downstream 173315 18743080 ~ 18743291 (+)
G101444 NA non-coding downstream 183316 18753081 ~ 18753287 (+)
LOC113538061 NA non-coding downstream 232871 18802636 ~ 18816962 (+)
G101403 NA other upstream 17274 18551446 ~ 18551724 (+)
LOC113539654 NA other upstream 1075906 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 1125530 17400426 ~ 17443468 (+)
rgma NA other upstream 1888205 16657601 ~ 16680793 (+)
G100345 NA other upstream 1967931 16600257 ~ 16601067 (+)
G101419 NA other downstream 28949 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 168578 18738343 ~ 18739998 (+)
G101466 NA other downstream 223870 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 387663 18957428 ~ 19122497 (+)
G101602 NA other downstream 552847 19122612 ~ 19123877 (+)

Expression


Co-expression Network