G101434 (znf710)


Basic Information

Item Value
gene id G101434
gene name znf710
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18738343 ~ 18739998 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120119
ACcttgtgtgtgagcaggtgCTGCTTCAGGTGGTGAACTTGCACAAACTCTAAGCCACACTCAGAACAAATGTGGGGCCGCGTGTTCTGGTGCTTCATTAGGTGGTTCTGCAGCTGGCTCCTGTAGGCAAAGCTCTTGTGGCACTCACTACACTGAAAGGCGGCAGGCCCCTGGTGACTGACCTGGTGCCGCCTGAGGTGGGCATAGGTGGGGAATTCCATGGTGCATTGTGTGCAAATATGACACCGCCCATTCTCGTGCTTGGCCTCATGTGTGCGCAACTCGCTGGGGTAGGCGAACCCACGTCCGCAGAAGCGGCAGCTGTATGGTTTGATGTCACTATGCTGCAGCATATGGCGCTTGAGGTGGCTGGTCTGTGTGAAGGCCTTCTTGCACACAGTACACTTATGTGGCCTTGTGCCTTGGTGTGTAAGCAGATGTGTCTGCAGGTGGCTTGGTTGCTTGAACAGTTTTCCACAGTGCAAGCACTCATGTGGCTTGACCCCACTGTGACCCAGGATGTGTGTCACCAAATTGTACTTTGATGTGTATGACTTCTCACACATCCGGCACTTCCAGCGCTTCAGGCCTTCACCCACATCCACACAGTATGACTCGTCGATTTGCACATTGACGTCCAGACGGTCAATCTGCACACGGCGGGCTGCAGGATTCTCACCATCTGCCCATGTCGCCACCTGCCCACCATCATCATACTCTGCTGGTGTCAGATCTGGCTCAGCAGCTTCGTAGGTCAAAACACTAGATTCATAGTAGCCTCTCATTGCAGGACTCACTTCCTCGTCAGGAGTCTTAAGATTCAGTGCTCTTTGCTCATCTGGCCCCTCTTCTTTGGTGCCTCCTCCCTCAGGCTGGCTGGCTGCTTCTATTTCCTGTGTGTGATTAGCATCCTGTGAAGTTGTGTCTGAGTCTGGATCACTCTGCTGGTTGTTTGACTCCTTTGCATGCTCAGGGCTGCCTTTATTTTGCTCCTCCTTTAACGTCAGTCTGTGGGGGGCAAGGTCCAACACTTCAGACTCACTGTCATTGCAATGAACATTTGAGTAGTAACAGGGGCTTGAATATTCAGGCCGCTCTCCTTTCACCCAAGTCTGTACATCTGTGGATTTCTTAGCCATTTCTACTGCCTCATCGTTTTCACTTTGGTGCCTCTTGGCCTTTCCCCGAGGTCCTGAACGCTTTTTCTCCACCCCCAAAAGTCCATGTGGCCTCCTGTTTTCTCCATTGGGCTCAGGTAGGTAGTCTCCATTTGCGCCAATCAACTGGTCTGAATACTCATACTCCATTGCCTCTGGAGGTGGAGGGGGGCAGTCACGTGCCTCTCCAGTGTAAAAGCCATTAGGGGCGATGGTGGTGCCAAAGATTTCATTCTGAGATATGAGGCCCAGCACAGCAGCTTGAGCCAGGGACAGGACCACCACTGGATCAGTCTGTGTGCCGGTGTCCACCACATTTCCCATCACTTCACTGTAGCAGCGCACCAGAGGAACTGCCTGCTCCTCCTTCAAGACAGCAAATGACATACAGTCAGAAAACATATTATAGTAAATCCCATGGCTGTAAACTACAGTCATGGCAACAGTCACTACAGTAGAATACTAGCATTCAATACATTAGCATAAATGTGACATGaag

Function

symbol description
znf710 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.

NR:

description
PREDICTED: zinc finger protein 710 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120119 True 1656 TUCP 0.51 1 18738343 18739998

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 5529 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 496734 18224061 ~ 18241609 (+)
reln reln coding upstream 549859 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1136169 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1196690 17530434 ~ 17541653 (+)
zgc:162879 NA coding downstream 419988 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 539152 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 555494 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 614128 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 778605 19518603 ~ 19526473 (+)
G101422 NA non-coding upstream 136157 18601922 ~ 18602186 (+)
G101417 NA non-coding upstream 140637 18597491 ~ 18597706 (+)
G101411 NA non-coding upstream 168578 18568998 ~ 18569765 (+)
G101402 NA non-coding upstream 189090 18549045 ~ 18549253 (+)
LOC117597608 NA non-coding upstream 190054 18547925 ~ 18548289 (+)
G101436 NA non-coding downstream 3082 18743080 ~ 18743291 (+)
G101444 NA non-coding downstream 13083 18753081 ~ 18753287 (+)
LOC113538061 NA non-coding downstream 62638 18802636 ~ 18816962 (+)
G101583 NA non-coding downstream 129102 18869100 ~ 18869377 (+)
G101586 NA non-coding downstream 132244 18872242 ~ 18872458 (+)
G101419 NA other upstream 138968 18598714 ~ 18599375 (+)
G101403 NA other upstream 186619 18551446 ~ 18551724 (+)
LOC113539654 NA other upstream 1245251 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 1294875 17400426 ~ 17443468 (+)
rgma NA other upstream 2057550 16657601 ~ 16680793 (+)
G101466 NA other downstream 53637 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 217430 18957428 ~ 19122497 (+)
G101602 NA other downstream 382614 19122612 ~ 19123877 (+)
cdon cdon other downstream 1180051 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 1264358 20004356 ~ 20053142 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00873450_00880028 ZNF710A, ZNF710 coding CI01000013 null 873228 ~ 880042 (-)