G101436


Basic Information

Item Value
gene id G101436
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18743080 ~ 18743291 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120121
GGGAGAATTTTTAAATTGCTGAACAGGAAACGGcaatacattaaataaacaaagtaaaaaataacaaagacaAAACATGACATTGGAGGAAAGTACCGGGAGAATGTGTGAGAGGGAACAAGGAAGagaaaaggagtgtgtgtgtgtgtgtgtctgtgtttggctGTGAAAGAGAGGAGATGaatgtgtatgagagagagaaatgaagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120121 True 212 lncRNA 0.39 1 18743080 18743291

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 10266 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 501471 18224061 ~ 18241609 (+)
reln reln coding upstream 554596 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1140906 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1201427 17530434 ~ 17541653 (+)
zgc:162879 NA coding downstream 416695 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 535859 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 552201 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 610835 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 775312 19518603 ~ 19526473 (+)
G101422 NA non-coding upstream 140894 18601922 ~ 18602186 (+)
G101417 NA non-coding upstream 145374 18597491 ~ 18597706 (+)
G101411 NA non-coding upstream 173315 18568998 ~ 18569765 (+)
G101402 NA non-coding upstream 193827 18549045 ~ 18549253 (+)
LOC117597608 NA non-coding upstream 194791 18547925 ~ 18548289 (+)
G101444 NA non-coding downstream 9790 18753081 ~ 18753287 (+)
LOC113538061 NA non-coding downstream 59345 18802636 ~ 18816962 (+)
G101583 NA non-coding downstream 125809 18869100 ~ 18869377 (+)
G101586 NA non-coding downstream 128951 18872242 ~ 18872458 (+)
G101593 NA non-coding downstream 161754 18905045 ~ 18905327 (+)
G101434 znf710 other upstream 3082 18738343 ~ 18739998 (+)
G101419 NA other upstream 143705 18598714 ~ 18599375 (+)
G101403 NA other upstream 191356 18551446 ~ 18551724 (+)
LOC113539654 NA other upstream 1249988 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 1299612 17400426 ~ 17443468 (+)
G101466 NA other downstream 50344 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 214137 18957428 ~ 19122497 (+)
G101602 NA other downstream 379321 19122612 ~ 19123877 (+)
cdon cdon other downstream 1176758 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 1261065 20004356 ~ 20053142 (+)

Expression


Co-expression Network