G101444


Basic Information

Item Value
gene id G101444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18753081 ~ 18753287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120129
caatgcccctgtgcacaaaggtccataaagacatggtttcccaaggttggtgtggaaaaactcaaatggcctgcacagagccctgacctcaacccaactgaacacatttggaatGATTTGGAACGCTGGCTGCATTCCAGACCTTCTTTTCcgaaatcagtgcctgacctcactaatgctcttctggCTGAATGTGCAGAAtttccc

Function

NR:

description
PREDICTED: methionine aminopeptidase 1D, mitochondrial isoform X2

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU120129 True 207 lncRNA 0.48 1 18753081 18753287

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 20267 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 511472 18224061 ~ 18241609 (+)
reln reln coding upstream 564597 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1150907 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1211428 17530434 ~ 17541653 (+)
zgc:162879 NA coding downstream 406699 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 525863 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 542205 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 600839 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 765316 19518603 ~ 19526473 (+)
G101436 NA non-coding upstream 9790 18743080 ~ 18743291 (+)
G101422 NA non-coding upstream 150895 18601922 ~ 18602186 (+)
G101417 NA non-coding upstream 155375 18597491 ~ 18597706 (+)
G101411 NA non-coding upstream 183316 18568998 ~ 18569765 (+)
G101402 NA non-coding upstream 203828 18549045 ~ 18549253 (+)
LOC113538061 NA non-coding downstream 49349 18802636 ~ 18816962 (+)
G101583 NA non-coding downstream 115813 18869100 ~ 18869377 (+)
G101586 NA non-coding downstream 118955 18872242 ~ 18872458 (+)
G101593 NA non-coding downstream 151758 18905045 ~ 18905327 (+)
G101603 NA non-coding downstream 370737 19124024 ~ 19125229 (+)
G101434 znf710 other upstream 13083 18738343 ~ 18739998 (+)
G101419 NA other upstream 153706 18598714 ~ 18599375 (+)
G101403 NA other upstream 201357 18551446 ~ 18551724 (+)
LOC113539654 NA other upstream 1259989 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 1309613 17400426 ~ 17443468 (+)
G101466 NA other downstream 40348 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 204141 18957428 ~ 19122497 (+)
G101602 NA other downstream 369325 19122612 ~ 19123877 (+)
cdon cdon other downstream 1166762 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 1251069 20004356 ~ 20053142 (+)

Expression


Co-expression Network