G101602


Basic Information

Item Value
gene id G101602
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19122612 ~ 19123877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120293
agtatcTCAGTTTTCAGGGGCtgaaaggtatttggacaaagtgacataattgtaaatataaccaaaattttaatacttggatgaaaatcctttgcactcaatgactgcctgaagtctggagacatcaccaaattctgagttGCCTCCCTGGaaatgctttgccaggccttcactgcagccacctccagttgctgcttgtttgtgggtctttctgccttcagtcttgtcttcagtaagtgaaaagcatgctctattgggttgagatcaggcgactgacttggccattgaagaatattccatttctttgccttcaaaaagtcttgagttgctttcgcagtatgtttagggtcattatccacctgcactgtgaagcggcgtcctatcagttttgtagaattggctgaatgtgagcagaaagtatagccttatacacctcagaattcatcttgcaaCTTCTgccagcagtcacatcatcaataaataccagtgagcccgttccattggcagccatacatgcccatgccataacactgcctccaccatgtttgacacatgatgtggtatactttggatcatgagctattccatacttttcttttcccatcattctggtacaaattaatcttggtttcatcagtccaaataatcttattccagaacatggtaGGCTTTtctagatgttttctggcaaagtctaatctggctttcctgttcttgaatgttaccagtagtttgcaccttgttgtaaaccctctgcatttacattcatgaaggtgtctcttgattgtagaatTTGACagtgatatgcctaccttctgCAGAGTGtttttgacttctgttgatgttgtgaaggggtttttcttcaccaaggaaaggattctgcgatcaaccactttagttgtcttccgtggtcttccaggccgtTTGATGTTGTTGCGCTCAccagtgctttttttcttcttaagaatgtacccacctgttgatttggccacacctaaggtttttgctgtctctcttatagatttatgttgttttttcagcctaataatggcctccttcacttgcattgagatctccttggacttcatattggtagctccagtcaaacagctacCAAacgccaactcaatacctgatatcaactccagaccttttatctgcttcatatgtcttgaagtaatgagggaatgaaCTGCACCttgtcaattaacttcttgtcagtcaattgtccaaatacctttgagcccctgaaattggaagtacttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120293 True 1266 TUCP 0.41 1 19122612 19123877

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 389798 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 881003 18224061 ~ 18241609 (+)
reln reln coding upstream 934128 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1520438 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1580959 17530434 ~ 17541653 (+)
zgc:162879 NA coding downstream 36109 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 155273 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 171615 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 230249 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 394726 19518603 ~ 19526473 (+)
G101593 NA non-coding upstream 217285 18905045 ~ 18905327 (+)
G101586 NA non-coding upstream 250154 18872242 ~ 18872458 (+)
G101583 NA non-coding upstream 253235 18869100 ~ 18869377 (+)
LOC113538061 NA non-coding upstream 305650 18802636 ~ 18816962 (+)
G101444 NA non-coding upstream 369325 18753081 ~ 18753287 (+)
G101603 NA non-coding downstream 147 19124024 ~ 19125229 (+)
G101803 NA non-coding downstream 116239 19240116 ~ 19240762 (+)
G101808 NA non-coding downstream 128935 19252812 ~ 19253426 (+)
G101812 NA non-coding downstream 143442 19267319 ~ 19267545 (+)
G101813 NA non-coding downstream 147976 19271853 ~ 19272115 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 115 18957428 ~ 19122497 (+)
G101466 NA other upstream 328339 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 382614 18738343 ~ 18739998 (+)
G101419 NA other upstream 523237 18598714 ~ 18599375 (+)
G101403 NA other upstream 570888 18551446 ~ 18551724 (+)
cdon cdon other downstream 796172 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 880479 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 953088 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1514883 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1720797 20844674 ~ 20849338 (+)

Expression


Co-expression Network