G101803


Basic Information

Item Value
gene id G101803
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19240116 ~ 19240762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120508
gttgttggtgccagaggggctggtttttcagaaactgctgatcccctgggaatttcacacacaaaagtctctaaagtttacacagaatggtgcgaaaaacaaaaaataatcctGTTTGCgtagggtctgcaggctgaaacacatTGTTGATGAGatagatcagaggagaatgtccagactggtctgagctgacaggaagtttatggtaactcaaataagcactctttacaactgtggtgagcagaaaagcatctcagaatgcacaacacatcaatccttgaggtagatgggctacaacagcagaagacgacatcagattccactcctgtcagccgagaacaagaatctgaggataccatgagcacagactcaccgaaactggacaatCTGATGTTTTGtccatgttgagatgcttttctgctcacggtggttgtaaagaatgattatatgagttactataccCTTGCTGGCCATTACTATAACCAGTCTGGCGTTTTCCTCTGATGTCTCttatcaacaagatgtttccacacacagaactgttgctctctctgtgttttattgtttttcacaccattctgtttgAGTtctagacactgttgtgtgtggaaatcccaggagatcagcagtttctgaaatactcaaac

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04115 p53 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU120508 True 647 lncRNA 0.43 1 19240116 19240762

Neighbor

gene id symbol gene type direction distance location
zgc:162879 NA coding upstream 139 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 507302 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 998507 18224061 ~ 18241609 (+)
reln reln coding upstream 1051632 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1637942 17581883 ~ 17602174 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 38388 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 54730 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 113364 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 277841 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 317258 19558020 ~ 19572869 (+)
G101603 NA non-coding upstream 114887 19124024 ~ 19125229 (+)
G101593 NA non-coding upstream 334789 18905045 ~ 18905327 (+)
G101586 NA non-coding upstream 367658 18872242 ~ 18872458 (+)
G101583 NA non-coding upstream 370739 18869100 ~ 18869377 (+)
LOC113538061 NA non-coding upstream 423154 18802636 ~ 18816962 (+)
G101808 NA non-coding downstream 12050 19252812 ~ 19253426 (+)
G101812 NA non-coding downstream 26557 19267319 ~ 19267545 (+)
G101813 NA non-coding downstream 31091 19271853 ~ 19272115 (+)
G101824 NA non-coding downstream 60492 19301254 ~ 19301961 (+)
G101855 NA non-coding downstream 94819 19335581 ~ 19335782 (+)
G101602 NA other upstream 116239 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 117619 18957428 ~ 19122497 (+)
G101466 NA other upstream 445843 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 500118 18738343 ~ 18739998 (+)
G101419 NA other upstream 640741 18598714 ~ 18599375 (+)
cdon cdon other downstream 679287 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 763594 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 836203 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1397998 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1603912 20844674 ~ 20849338 (+)

Expression


Co-expression Network