G101813



Basic Information


Item Value
gene id G101813
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19271853 ~ 19272115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU120518
CTTCTTCAGAGACATATATGAAAAGATATCCCAAATTACAAGACATGGAGGAAAAGTGAAGCGATATaattgaattaatgaatgaatgaatgaatgaatgaattaaaatatggatggatggatgtttgaaACCCCCATAACTATGGTTAAATTATGCATTAATGGATTTTTTGTACATTGAATGGTTTTTATGAAGTATCTTAATAGGCACAGGACGGTAAACTGGGAACTATAACTGGGAAGTAAAACTAAGAAAGGTAGAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU120518 True 263 lncRNA 0.32 1 19271853 19272115

Neighbor


gene id symbol gene type direction distance location
zgc:162879 NA coding upstream 31876 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 539039 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 1030244 18224061 ~ 18241609 (+)
reln reln coding upstream 1083369 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1669679 17581883 ~ 17602174 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 7035 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 23377 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 82011 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 246488 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 285905 19558020 ~ 19572869 (+)
G101812 NA non-coding upstream 4308 19267319 ~ 19267545 (+)
G101808 NA non-coding upstream 18427 19252812 ~ 19253426 (+)
G101803 NA non-coding upstream 31091 19240116 ~ 19240762 (+)
G101603 NA non-coding upstream 146624 19124024 ~ 19125229 (+)
G101593 NA non-coding upstream 366526 18905045 ~ 18905327 (+)
G101824 NA non-coding downstream 29139 19301254 ~ 19301961 (+)
G101855 NA non-coding downstream 63466 19335581 ~ 19335782 (+)
LOC117597536 NA non-coding downstream 63883 19335998 ~ 19339799 (+)
LOC117597585 NA non-coding downstream 90618 19362733 ~ 19386937 (+)
G101904 NA non-coding downstream 214286 19486401 ~ 19487282 (+)
G101602 NA other upstream 147976 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 149356 18957428 ~ 19122497 (+)
G101466 NA other upstream 477580 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 531855 18738343 ~ 18739998 (+)
G101419 NA other upstream 672478 18598714 ~ 18599375 (+)
cdon cdon other downstream 647934 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 732241 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 804850 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1366645 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1572559 20844674 ~ 20849338 (+)

Expression



Co-expression Network