G101824


Basic Information

Item Value
gene id G101824
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19301254 ~ 19301961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120529
gTAAaacttgcttgcaataactgcatcaagatGGTGACCCAGTGACtgcaccaaactgttgcattcttcttttgtgatgcttctTCAgacttgtaccacagcttctttcaggtgttgtttgttttgtgggtttctcccttcagtctcctctccGGGGGTGGAACAGTGGATTGTAATACCTTCAACCCtaccctgtggaggttgttgttcAGGTCACTGACTgatgttttttgggtttttcttcacagctctcacaatgctTCTGTCATCACATGCTGttgatttttaacaacaaatgcagtcttcacaggtgaacgCCAGCACTCAAACCAAGAgcagatattcagagctattaattgtttaatcacTCAaactaacagggcacacctgggcaataAGAAACACccgtcagtcacatgttccaatatttttgattacTTGAAAAAGGGTGAGTTCAAATAAAAGGTACCATgttgtaagttgtttaacacatctagatgtaaatatcaggaaatgaaagctgaaattctgatttattccGATcaagagggaaaatcgatcagagccactgcaaatacattgggcatagccaatacaacaatttgaaatATCAGTGAAAccaagaaaccactggtgtactaacaaccagacatcgaacaggtcagccaaggaaaacaacagcagttgatgacaaaaacaATGTCAGAG

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU120529 True 708 lncRNA 0.41 1 19301254 19301961

Neighbor

gene id symbol gene type direction distance location
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding upstream 17551 19279150 ~ 19283703 (+)
zgc:162879 NA coding upstream 61277 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 568440 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 1059645 18224061 ~ 18241609 (+)
reln reln coding upstream 1112770 17761517 ~ 18188484 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 52165 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 216642 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 256059 19558020 ~ 19572869 (+)
ehd2b ehd2,ehd2b,LOC101154661,LOC108413254,LOC103039027,LOC107565090,LOC107668886,LOC107670629 coding downstream 271342 19573303 ~ 19581510 (+)
napab napa,LOC108264617,LOC108413256,LOC107668964 coding downstream 287566 19589527 ~ 19609798 (+)
G101813 NA non-coding upstream 29139 19271853 ~ 19272115 (+)
G101812 NA non-coding upstream 33709 19267319 ~ 19267545 (+)
G101808 NA non-coding upstream 47828 19252812 ~ 19253426 (+)
G101803 NA non-coding upstream 60492 19240116 ~ 19240762 (+)
G101603 NA non-coding upstream 176025 19124024 ~ 19125229 (+)
G101855 NA non-coding downstream 33620 19335581 ~ 19335782 (+)
LOC117597536 NA non-coding downstream 34037 19335998 ~ 19339799 (+)
LOC117597585 NA non-coding downstream 60772 19362733 ~ 19386937 (+)
G101904 NA non-coding downstream 184440 19486401 ~ 19487282 (+)
G101919 NA non-coding downstream 283224 19585185 ~ 19585435 (+)
G101602 NA other upstream 177377 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 178757 18957428 ~ 19122497 (+)
G101466 NA other upstream 506981 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 561256 18738343 ~ 18739998 (+)
G101419 NA other upstream 701879 18598714 ~ 18599375 (+)
cdon cdon other downstream 618088 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 702395 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 775004 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1336799 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1542713 20844674 ~ 20849338 (+)

Expression


Co-expression Network