G101904


Basic Information

Item Value
gene id G101904
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19486401 ~ 19487282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120627
ccattttcaggggctcaaaggtatttggacataattgtaaaaatattgtaaacataTAACCACagttttaatacttggatgaaaatcctttgcagtcaatgagtgcctgaagtctggagcccatgttctcaaagctcaaattctgagtttcctccctggaaatgctttgccaggccttcactgcagccacctccagctgctgcttgtttgtgggtcttcctgccttcagtcttgtcttcagtatgtgaaaagcatgctctattgagttgagatcaggtgactgacttggccattgaagaatattccatttctttgccttcaaaaagtcttgagttgctttcgcagtatgtttagggtcattatccacctgcactgtgaagcagcgtcctctctgttttgtagcatttggctgaaggtgagcagagagtatagccctatacacctcagaattcatcttgctacttctgtcagcagtcacatcatcaatgaacaccagtgagcccgttccattggctgccatacatgatgtggtatactttgaatcatgagctgttcctttctttcaccatacttttctcttcccatcattctggtagtAGTTAATAGTGCTAGATGGGTAGTTGGCCAAATGTGATTAAGAGGGATTAAGTACtaagcccctgaaaatggaagtactttgcttaaaatggctgtaattcctaaatggtaaatgccatatttttgtggaacctcttaaaataaagctgaaagtctacactttgatcacatcttgattgttttatttcaaatccattgtggtggagtataaaggcaaaatcacaaaaactctgtcattgtccaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120627 True 843 lncRNA 0.40 2 19486401 19487282

Neighbor

gene id symbol gene type direction distance location
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding upstream 126078 19354126 ~ 19360323 (+)
spred3 spred3,LOC108264009,LOC107554984 coding upstream 177600 19295492 ~ 19308801 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding upstream 202698 19279150 ~ 19283703 (+)
zgc:162879 NA coding upstream 246424 19159986 ~ 19239977 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 753587 18681517 ~ 18732814 (+)
lmo2 lmo2,LOC107554475 coding downstream 31321 19518603 ~ 19526473 (+)
bicra gltscr1,LOC108413251 coding downstream 70738 19558020 ~ 19572869 (+)
ehd2b ehd2,ehd2b,LOC101154661,LOC108413254,LOC103039027,LOC107565090,LOC107668886,LOC107670629 coding downstream 86021 19573303 ~ 19581510 (+)
napab napa,LOC108264617,LOC108413256,LOC107668964 coding downstream 102245 19589527 ~ 19609798 (+)
st14a st14 coding downstream 148169 19635451 ~ 19660991 (+)
LOC117597585 NA non-coding upstream 99464 19362733 ~ 19386937 (+)
LOC117597536 NA non-coding upstream 146602 19335998 ~ 19339799 (+)
G101855 NA non-coding upstream 150619 19335581 ~ 19335782 (+)
G101824 NA non-coding upstream 184440 19301254 ~ 19301961 (+)
G101813 NA non-coding upstream 214286 19271853 ~ 19272115 (+)
G101919 NA non-coding downstream 97903 19585185 ~ 19585435 (+)
G101990 NA non-coding downstream 219069 19706351 ~ 19707573 (+)
G102050 NA non-coding downstream 367235 19854517 ~ 19854743 (+)
LOC113527003 NA non-coding downstream 405873 19893155 ~ 19897283 (+)
G102091 NA non-coding downstream 436980 19924262 ~ 19928951 (+)
G101602 NA other upstream 362524 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 363904 18957428 ~ 19122497 (+)
G101466 NA other upstream 692128 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 746403 18738343 ~ 18739998 (+)
G101419 NA other upstream 887026 18598714 ~ 18599375 (+)
cdon cdon other downstream 432767 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 517074 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 589683 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 1151478 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 1357392 20844674 ~ 20849338 (+)

Expression


Co-expression Network