Gene
RNA
| Item | Value |
|---|---|
| gene id | G102106 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 19997871 ~ 19998083 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU120857 | True | 213 | lncRNA | 0.43 | 1 | 19997871 | 19998083 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-151h10.2 | LOC108264443 | coding | upstream | 152034 | 19835533 ~ 19845837 (+) |
| prdm10 | prdm10 | coding | upstream | 162442 | 19801828 ~ 19835429 (+) |
| LOC113526906 | LOC108264037 | coding | upstream | 209979 | 19782594 ~ 19787892 (+) |
| aplp2 | aplp2 | coding | upstream | 224429 | 19682060 ~ 19773442 (+) |
| st14a | st14 | coding | upstream | 336880 | 19635451 ~ 19660991 (+) |
| treh | treh | coding | downstream | 99612 | 20097695 ~ 20115417 (+) |
| ttc36 | ttc36 | coding | downstream | 360130 | 20358213 ~ 20360195 (+) |
| trip12 | trip12,LOC107679016,LOC107710892 | coding | downstream | 575198 | 20573281 ~ 20630604 (+) |
| dner | dner | coding | downstream | 636945 | 20635028 ~ 20657916 (+) |
| sphkap | sphkap | coding | downstream | 775521 | 20773604 ~ 20819328 (+) |
| G102098 | NA | non-coding | upstream | 14724 | 19982947 ~ 19983147 (+) |
| G102089 | NA | non-coding | upstream | 25752 | 19971693 ~ 19972119 (+) |
| G102093 | NA | non-coding | upstream | 61447 | 19936163 ~ 19936424 (+) |
| G102091 | NA | non-coding | upstream | 68920 | 19924262 ~ 19928951 (+) |
| LOC113527003 | NA | non-coding | upstream | 100588 | 19893155 ~ 19897283 (+) |
| G102108 | NA | non-coding | downstream | 1309 | 19999392 ~ 19999674 (+) |
| G102124 | NA | non-coding | downstream | 56949 | 20055032 ~ 20055232 (+) |
| G102285 | NA | non-coding | downstream | 397784 | 20395867 ~ 20399958 (+) |
| G102286 | LOC107557830 | non-coding | downstream | 423938 | 20422021 ~ 20464632 (+) |
| G102325 | NA | non-coding | downstream | 475259 | 20473342 ~ 20473737 (+) |
| cdon | cdon | other | upstream | 28084 | 19920049 ~ 19969787 (+) |
| G101602 | NA | other | upstream | 873994 | 19122612 ~ 19123877 (+) |
| sema4ba | sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 | other | upstream | 875374 | 18957428 ~ 19122497 (+) |
| G101466 | NA | other | upstream | 1203598 | 18793635 ~ 18794273 (+) |
| G101434 | znf710 | other | upstream | 1257873 | 18738343 ~ 18739998 (+) |
| bcl9l | bcl9l,cxcr5,LOC108264003 | other | downstream | 6273 | 20004356 ~ 20053142 (+) |
| ddx6 | ddx6,LOC107691843,LOC107670620,LOC107572719 | other | downstream | 78882 | 20076965 ~ 20092932 (+) |
| pid1 | pid1 | other | downstream | 640677 | 20638760 ~ 20686188 (+) |
| irf2bp1 | irf2bp1 | other | downstream | 846591 | 20844674 ~ 20849338 (+) |
| prx | NA | other | downstream | 941330 | 20939413 ~ 20967271 (+) |
