G102124


Basic Information

Item Value
gene id G102124
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20055032 ~ 20055232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120875
AAGAGATCCCTTTGCAATTTGATACATCTGAAGCATGTGCTAAGTTCATAGACTCCTACCCAAAAGGACTACGTGCTGTATTACATGCAAAAGTTGTGTTAACAAAGTCAGTTTTGCTGATTGCTTTATCacattaaatgtggaaaaagatctgcCATGATTTACTTTGctttcattttcacaaaaacctgcaattttaac

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU120875 True 201 lncRNA 0.35 1 20055032 20055232

Neighbor

gene id symbol gene type direction distance location
si:ch211-151h10.2 LOC108264443 coding upstream 209195 19835533 ~ 19845837 (+)
prdm10 prdm10 coding upstream 219603 19801828 ~ 19835429 (+)
LOC113526906 LOC108264037 coding upstream 267140 19782594 ~ 19787892 (+)
aplp2 aplp2 coding upstream 281590 19682060 ~ 19773442 (+)
st14a st14 coding upstream 394041 19635451 ~ 19660991 (+)
treh treh coding downstream 42463 20097695 ~ 20115417 (+)
ttc36 ttc36 coding downstream 302981 20358213 ~ 20360195 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 518049 20573281 ~ 20630604 (+)
dner dner coding downstream 579796 20635028 ~ 20657916 (+)
sphkap sphkap coding downstream 718372 20773604 ~ 20819328 (+)
G102108 NA non-coding upstream 55358 19999392 ~ 19999674 (+)
G102106 NA non-coding upstream 56949 19997871 ~ 19998083 (+)
G102098 NA non-coding upstream 71885 19982947 ~ 19983147 (+)
G102089 NA non-coding upstream 82913 19971693 ~ 19972119 (+)
G102093 NA non-coding upstream 118608 19936163 ~ 19936424 (+)
G102285 NA non-coding downstream 340635 20395867 ~ 20399958 (+)
G102286 LOC107557830 non-coding downstream 366789 20422021 ~ 20464632 (+)
G102325 NA non-coding downstream 418110 20473342 ~ 20473737 (+)
G102327 NA non-coding downstream 420572 20475804 ~ 20476171 (+)
G102370 NA non-coding downstream 523386 20578618 ~ 20581945 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other upstream 1890 20004356 ~ 20053142 (+)
cdon cdon other upstream 85245 19920049 ~ 19969787 (+)
G101602 NA other upstream 931155 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 932535 18957428 ~ 19122497 (+)
G101466 NA other upstream 1260759 18793635 ~ 18794273 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 21733 20076965 ~ 20092932 (+)
pid1 pid1 other downstream 583528 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 789442 20844674 ~ 20849338 (+)
prx NA other downstream 884181 20939413 ~ 20967271 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other downstream 970795 21026027 ~ 21102216 (+)

Expression


Co-expression Network