G102270


Basic Information

Item Value
gene id G102270
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20244335 ~ 20290991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121045
GGTGAAGTTGGAAAAACCtgatgaaatattattattattattattattattattatagctattatttataaagtgtgtTAGTGACAGATTAAAGTAATAGATGGCGTGCATTAAAACTATTACTATAAGGAGTCATCAGGTTTGGATCTTCTTGAATCTGTAGTTATCTCGTCTTCAGATCAGCTTCTGCTGGCCGTGCTTCATGTAAAAATGAGAACGCGGCACATGAAACACTGAATGTGACTCAGGTGTAGTATTCTAAAGGGTTGAGATATACCTGGCATTTGAGCAACGCCGCCCAGCTGTCGCTTTCCCCCGAGACTTCATCAACAAACCCATTTTCCTTAACGACGCCACTGTTAGGCATCTTTTAATAAACCACTTTTTATAAGCACATTTCTCAATCAATACCACACCTCTCGCTTTGACTGCCAGTGCTGTAAACAGAGTGAGGTCAAGGCAGCTCATTGGGCTTGAGAGGACTTGCCCTCAGCTTCTCAGTCAAATGTAAATGAATCTCATTTAACCCTGGACAGCTGATTTCTTTGTACAAACAGACGTGAAACGGTGGACGAAGGATGAGTCAAGCTCATTAAAGATTGCACCCAGTTTTTCTTCTCATGCAGTCGTAACCAGCGTATTTGtactaaaatgaattaaattttacAAACTGGTCTTTATGGGCTTTTCAGCATTGTTTCTCAGCGTCTGTAATTCTTTGCTGAGCCACAGCCTTCCCTCTCCCATGATTAGTTCAAGCCATTCAAATTACAGGCAATTTGTTTGCAAGCTCCGACTTGTGATTTCAAACTGTAGAAATGTAaatccacacacagacacagctggGTGAGGCTGTGAGCTTGCACAAAGAGGCAATGTCTGAGATCTGTACAGCTTGATCTCTGAGTACACAAACCTGACCGCTCCCCATTGTCAAATCCAGCACATTGAGGATAGTCTACAATAATAATTTGTACAAAGCACATATTTAAATCGTCAGGATGAAAACTGCCTCCTGTCCTTAGCAGCTGGAGAGGTTCATTTTTTTTGGCATATAGTCGTTATTTATCTCAGAAACAGAAATTtgtatcagagtacagaaattGCACAAAAAAGTATGCGTTCACATAAGTGGTGGTGGATAATATGgtcatgttttgtgtttaagaGACGTGCTGTATCGCAGAGTAAGCAGTATTTTGTAGCTGAGAAATAAAGCAGCTTGATGAAATATGTGAACATGCTGCATCTTGTTTTACCACTCACTGCATGCTTCAGCTCATTGGGAAACATGGTTACAGGATCTTTCTTTTAACTCTTTGTAGAAACAGATGGgtttcacacacagaaacattaaGCTCAGTCTTATTAAGGTTGTATATATAATCAGGATAATATACTTGTGATTTGTTCAGTAATTAGGACTGGGGATTGCACTTGGCATGCTCGTCTGTTGACAGAAGGGTTAGAGTCAGGCCAGATTATTTATGAACTAGATATGGTCTGTttggcagatgttttttttttttttttttttttcccaaattaaacctccatttccattttcagttgttctttaaaaaggaaatactaaatgcatatatttttaGTCCCTGTCATGCACCTGGCACTGTGTTAGACGAATCAGACAAATCATATAAGATTAAGTAGGAAATTAAGAAATGTAGGTTATCTCAGGCCAAGCAGATGGCAAGTGGAAAGATTCTTGGTATTTTCCTGATTTGGCACATCAGATGAAAATATCAGTCAGCCTTTTCTAGGTTTTTGTGTTATTGGCTATGTCTACTCTGACAGAAATAAAGACTGCTTTTGCTCGCAAAATTTTTCCTTGGTCACCATTTTGGGTATTTTTCATCATTAAGTTTTATATCATGTATCAGTTCACTAACGTGTGACATTTCAAGGTTTATCTGTGCGTTTTGGAAGTGGTCAGGTTAATCCTCTGAGGGCAGTCTGATGCAGTTCCATAAAGAAAATTGATTTAGACCACATGTTTTAATGCATACTGCTTCAGCTGTTTTTACAAAATATGAAAGAACTCTGCTTAATTTGAACAAAATCTTGGATAGCGATTAAACCCTTTCTGTGAGAAAATGTTACAACAAATTACCTTCAATAACCCTATTACAATTTAAAGACGTAATTTTTAATATGGAAAAATTTTGGAATTTACTTTTGGTTGCAACAATGTGTGCTGGTATTGAGGGTCTTTCTTTGATCAGAAAGTCTTGTCTGATTTGTGTGGAGATGATCTTTTGGCTCATGGTGGAGATCAGGATTAATTTCTGGCGAAGACAATCACATTTTATGTCCTTTGAAGCTGTTCAGTCAGAGAGCTTGTGAGGAGAAGACAGGGATGCTGTTCTAACTTTTCACCATGCATTTATTATCTCTTGCTTGCAAAAGCAAGGTTCGAGTGGTGTATTTAATTTGTGGGTCTTGCCAGGGTTTTGCATGTTGTCACGATAAGCATTATCATTACCGATACCAGATAATAGAGACTGTCTTCACAGCCTGCACAGGAAGGACAGGAAGTTGACAGTTATAGTCAGCGCTGATTGGCAAATGTGTAACTTGCTAATATTATATGACATTTGTGATACCTGCCCTTTACAAGCAAATACAGGAATTCGTTTCTCATGGGAAAAGTGCTGGTTTATTAAAGGCTTATGCTGAAGGCTAGGATTTAGTGAGGGTAATCAAGTTCTAATGTCTTTTGAAGATGTTAAGTCAGTGAGATAGAGAAGCGGAAAGGGGGAGATCTTCACTGTTCTTTGATTACCATTTGACAGAAAAATTTATGTTTGAATAGCATTTGTAATTTGAGTTTTGGCAATCTTTTACTTTGCTCTGAGGAGCAGTAGATAGTCGGATCACCGAGGCAGCACACAGATACAAGACAACAAATGGGGAAAATTCAGGGGGACTGGTTGTGTCGCACTTGTGTTTACTCTTCCTTACAAGCAAACACAGGAATTCAGTCATTCACCTTCATGACAGTCATTCAGCTTGAGGTCAAAGATCGGGCCTATTAAAGTGAAGCTCTTTTGAAGTGCTAAGTGATATACAACCTGTTGTGACCTTTACAATAGAAGCCAGAACAGTAATGTCTGCGGTGTGTAAGAAGGTATTCAGAGAAGGGAGATTGGTCACATCTTCCACATTGCCTTTGTAAAactgatttaaagaaaaagtgaCACCTGGTGCAGATGTTCACACAACTGGTATGTCCATTGCTTGCTTTCAGCcactttcatcatttttttttttttttactcagtgaAGCCTGCTATCAGTGATGGTGGAAAAATGCGACACAGCGTAGACCTTTTTGATTATATGAACCCTTGTTCTTGATTCAGAGGTTTTGAAACAGTTGGAATGAAGTGCACGCTCTCTGCATCATCACATATTGAAATCAGTTCCCAGTGAACACTCCAATCAGAATTGCCTGTGCCTCTGCTGCTTCGAATACAATAACTCTGATTACATGTGTCTTATTtctgtatataattaaaaacagcGATttcaaaaaaacagcatgtagtcccatcacacacacactatttctaataattttttctctttctttaggATAGCATGGGTTTATAACTCCTTTGTCATAAGGCATATGTCACTCATCAATTCAAGTAATGTAGCAGAAAATAACAGATAATAAAAGCTGATCATTTTAGCAGTTTGTTTGCTGATACAATATTtgtgtaagtatgtgtgtgtgtgtgtgagagagagagagagattacagaaGAGAACCTAAAAATATAAGAGAATTCATTCAACATGAGTTACCCCTTATAACCAGCTTCATCACTATCTGTTAAAATTATATCAGCAAGCTTAAGATACATCACATATGTTGGGCAGTTTGCTGGATTGTGCTCATTTATCTGCTCAATTACCAGTAATGTATTGCACAGCGTATATGCCTTTGAAGGAGGATTTATATGTTCGACACTTGATGTATGCCAGGAATGGCAATGTGGATGCCTTCTTCAAACAGGAATGTCTGTGAGGTCTGGCGAACCTTTCACCAAGGTGAGAGGTGAAAGTCTTTCACTAGGGTGAGTAGGATCATCTCAGCCAAATTTGGAAGGAAAGTATCTACTGATTAGTAGCTAGGACGACAAACATCCCAAATGATAGTccagaaaatattaattataattaatttatacaaAATGCAATTATTTCAAATGGGAATCTGTCTAGCTTGGAAGTGTAACCTAAGTAATAACTTGGCAATATGCGAATTTAACAAATGTCACCCTCTGCTCAGATTAGACACCATACGTGCTGCCTGTTTGGTGCCCAGAGTGTGAATGATGCTGCTTGTAAACTGAAAATTAATTGCAGTTAATCAACTAGGTATTCCTCAGTATGAAAGTTACAACAATCAGCGCTTCACTGATTCATTGGATTGTTGATATATCTTTCTTGATTACTGTGTCACTGTTCTAACCACCCATTCTGTGTTAGCTACATGAGGAGTTCCTCTgggtgtagatgtgtgtgttacaaagtGTGATGTCTGGCAATTTATTGTTGGAATTGATTACCATGTCTTGCTGGCCCTAATGTAGGTATAATTGCTGAACAGAAACATCTGTTTTTGCTCTGAAAACAAATGGACAGATAAAGCATGGAAAGTGTTGACCAGAAACAGGTGTGTTTTCAGAAGGTCAGTGAGCCAGCAAATGAGTGAAAATCTGCTCTGCTCATCAGCCagatctcagtgtgtgttttcttaacCGCAAGGGTTGCTGGAAGGCAGAGGACCTTttttctcactgtttctcttggtctgtttgtctgtccttcgagagagagagccagTGTGAAAAGGAGATGTGTATTTGCCAGACAGTGACACATGGCGTGGCATTTGGCACAAGTTTCTCAGATGTACTGTTAGTGTGTTAAGTAATTATACAGACATTGAGATGGAGGGGAGGGTTGGATGTGCAATGCGAAAAACAGCTTGACCTGGCTTTTCTGATATGACTGGGTTAATTTCTTGCTGAGCTGTTGGAATAGTTTAGCTCTTGGGCAGGGAAGAGCAGCAAGAGAACAACAGAGTCCCAATTTGCCACACCGCATTCTTCTTGAACATTGAGGATTAAggctaaaatattttaacagagCCAGCATGCCAAATTTTTTGtcaattaaaatttattttcatttgctttatatgcatttcttttttgACATGGAGGTGGAGATTTAGTTTTTAGATTAGCTCTGCTGTTCTTGAGAAATAGGTGTTTCCCCTGCATGAATAAACACTGAGGAGCTCCACAcataaacagcaaaaacagcagaaataatTAAGTGATTAAGTACAAGCATCCATTAAGTATCCATTTTCTGAAGGCTGCAGAGTGTGTTTAATGATGCAAAAATTAGGGACTTAGTAAGTTTGAAGTAGTCCTGAAGGTGAAGAAGTTTCTGTGATAGTCACCTCTCATTACGATCCTGTTGTTGAGGCGGACGTGCATTGCCTTTGAGCATTCtcttttgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcgcatgcgcatgtgtgcgtgtgtgtgcgcgcatgtgtctTTTGGGATGAGTCTGTGCAGGAAGCATTTGTACAGCACCTGAAGGCATAGTGCAGTCAAGAAGAGATAAATCTCACCTGGGCCTCTTAGGATAACACAAATCTCTTACACCAGGAGTCAAGAGCTCACTGTAGACACATCTGTCCATTgccgcacatgcacacacacacaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121045 True 5826 lncRNA 0.39 2 20244335 20290991

Neighbor

gene id symbol gene type direction distance location
LOC113526513 cxcr5 coding downstream 189899 20051332 ~ 20054436 (-)
pik3c2a pik3c2a,LOC108264692 coding downstream 747342 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 910905 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1502611 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1720109 18282619 ~ 18524226 (-)
si:ch211-132b12.7 NA coding upstream 71339 20362330 ~ 20377332 (-)
ccnp NA coding upstream 91819 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 131282 20422273 ~ 20453147 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding upstream 169352 20460343 ~ 20464685 (-)
foxg1c NA coding upstream 179369 20470360 ~ 20471089 (-)
G102225 NA non-coding downstream 150533 20092984 ~ 20093802 (-)
G102224 NA non-coding downstream 152007 20089591 ~ 20092328 (-)
G102147 NA non-coding downstream 244012 20000101 ~ 20000323 (-)
G102146 NA non-coding downstream 245154 19998963 ~ 19999181 (-)
G102129 cdon non-coding downstream 276558 19943711 ~ 19967777 (-)
G102434 NA non-coding upstream 67224 20358215 ~ 20359541 (-)
G102444 NA non-coding upstream 180880 20471871 ~ 20472745 (-)
G102449 NA non-coding upstream 187342 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 203266 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 287699 20578690 ~ 20581168 (-)
LOC113527007 NA other downstream 264076 19980069 ~ 19980259 (-)
G101178 NA other downstream 2047529 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4886772 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5897327 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6681761 13550680 ~ 13562574 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 104875 20395866 ~ 20416574 (-)
G102566 NA other upstream 662611 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 704350 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1940457 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3299954 23590945 ~ 23610448 (-)

Expression


Co-expression Network