G102272


Basic Information

Item Value
gene id G102272
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20282185 ~ 20356597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121048
TAGggacagataagaaagaaaggaggaggtGGGAGACTGTGAAACAAGTCTCTGTCAATTGCATTggtaatataaaaagaaataaccTTGGTTAATAGGACATATATTAATAAGTGGTGAACAGAACATGAGGGTTAAGAGAGGGGTTAATAGAGTAAATCAGCCTGTGCTGTAGGGCGTGGCTCTTATTTATCACAATAGAGCTGTGTCACCAGCAGCCCCTGTTTTATCTGTGACAGCCATTTGCACTGACATTTAAAAGGCTTGCAATATGATCCCGTGGGTCATGTGGTCTATGTTCAGGTTGTGGGGGAAACGGGGAAATGGCTTCAAGGATCAGTGGCACATAGGTAATTGAGAGAGCATGGCCTCAATTTGTCGTACTCCTCCTATTTAGACTCTATATCTACGTACCCACGATACACCATCCATGTGAAAGAAGGGTGATGTCAGGCATTAATCTTGCACTGATAATGAATTGACTTTATCCAAGCTCTCAGACACGGTTCCTCTCCCTACGGGGAAGCCAGAGCCGTAAGTACTCATTTTCTCCTAGCAATCAATGAAGAGTCCGCCCATCTGTCACCTATACTTAACGTACCCCTAACCTCTGATACCTAATTTTAGCTGTGTTGTGTTAATTATCTCTCCAACACTGTGTACTTAGTCCATTTTCTCAGGcgaacacaaaacatttttaaaatcatatttattttacaggtaTTTGGTTATTTTGGCCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121048 True 743 lncRNA 0.42 2 20282185 20356597

Neighbor

gene id symbol gene type direction distance location
LOC113526513 cxcr5 coding downstream 227749 20051332 ~ 20054436 (-)
pik3c2a pik3c2a,LOC108264692 coding downstream 785192 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 948755 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1540461 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1757959 18282619 ~ 18524226 (-)
si:ch211-132b12.7 NA coding upstream 5733 20362330 ~ 20377332 (-)
ccnp NA coding upstream 26213 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 65676 20422273 ~ 20453147 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding upstream 103746 20460343 ~ 20464685 (-)
foxg1c NA coding upstream 113763 20470360 ~ 20471089 (-)
G102271 NA non-coding downstream 19045 20257332 ~ 20263140 (-)
G102225 NA non-coding downstream 188383 20092984 ~ 20093802 (-)
G102224 NA non-coding downstream 189857 20089591 ~ 20092328 (-)
G102147 NA non-coding downstream 281862 20000101 ~ 20000323 (-)
G102146 NA non-coding downstream 283004 19998963 ~ 19999181 (-)
G102434 NA non-coding upstream 1618 20358215 ~ 20359541 (-)
G102444 NA non-coding upstream 115274 20471871 ~ 20472745 (-)
G102449 NA non-coding upstream 121736 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 137660 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 222093 20578690 ~ 20581168 (-)
LOC113527007 NA other downstream 301926 19980069 ~ 19980259 (-)
G101178 NA other downstream 2085379 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4924622 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5935177 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6719611 13550680 ~ 13562574 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 39269 20395866 ~ 20416574 (-)
G102566 NA other upstream 597005 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 638744 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1874851 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3234348 23590945 ~ 23610448 (-)

Expression


Co-expression Network