G102285


Basic Information

Item Value
gene id G102285
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20395867 ~ 20399958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121062
TGTGGAatagattatatttatattgagctCATCAGGACGATTTGAGGaacaaaagaagcaaaaatgtcaaatgtctGATCTGTTcaagaacaaacagaaaaggcaaaataaaacaaacacacacaaaactcactCCACCTCACTCACTCAGCTCTCATCCTAAATGAGATCATTAACCAGCataacacagagagacagagagaagagcaagagagacacaTTTCAAATtctcatttaataaaaatctcttTACATCAAAGCCTGCAGAATTGTACAGCTGAGTGACTGGGTGTTTTACAGCAGGAGGCCGGCTGCAGTTGTGGGGTGTGGCCACGCAGAGCTGTGCAGAGTTCTGCATAGTCCTGCCCAGCACAGTTTAGTGATTCCTCTGCTACACCTGCTGAGTGACGACTCTGGTGTCTCTAAGCAATGAAACTAAGACTACATCTTCCCAGTGCTTGTACTGTGTGGAATTCTGCCCTCTGTTGCAGACCCCTGGGTTACACAGTGATGACAGCCTTACAGGTGCAGAAAGTggacacacactccacacacactcatccacagaGCTGCGGCTGCTCTCTTCCCTTTACACATCTACggtttctgtatgtgtgtgcatgtgtatatatatatatatatatgtcagcAATCGCACCcacccccctccctccctccctcccaaCCGCCCCACATTATGGGTCCTGTacaaaattgaattaaaacaaacacacacacttgaagaTGTACAttcagaacaaacacacacctcaccatTCACACAaaaccactacacacacacacgcacacactctctatCAGCAGTATGTGTTATTGAAACACCCCAGTAACAACTGAATGCATAAAAAGGGCACTTGCACTGCAGGATGGCTTCATGTGTGCATTTCATTCCTGTATTAAAAACTGTAACAATCTGAAGTTCTACTTCGTTTTAAACTCGGTTAAAATCGTGCATacaagaaagtgtgtgtatacagtatatgctgtTTCTGAGGTGTTTAACACAATGAGTCTATGACTCATTTTATTAAAAGGTGTgaatagtgtgtagtgtaacaGACAGCCTGAAGGACCAATCTGAATCAGGCACATCTTAACAAGGCCTTCACTAGTCAACAGACTGCTGATAGCAGTGAGTAAGTTGCCGTGGTGTTTGTTTTGCTggtgacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggttTCCAGTTTGCTGGTAACaggtaacagtgtgtgtatgaatgggTGTTAGCGTGGTGTCCAGGTTGCTggtgagacagtgtgagtgtaggtgtgtgttgcAATGATATCTGGTTtgctggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctCTCCATCACTCTCGAACACTGGCAGAGTAAGAGAACTGAGGGAAGTGTGTGCGCGCATCCGAGTCCTCCGCATCCAAACTATCAtctgcacaaacacagagaa
>TU121063
TGTGGAatagattatatttatattgagctCATCAGGACGATTTGAGGaacaaaagaagcaaaaatgtcaaatgtctGATCTGTTcaagaacaaacagaaaaggcaaaataaaacaaacacacacaaaactcactCCACCTCACTCACTCAGCTCTCATCCTAAATGAGATCATTAACCAGCataacacagagagacagagagaagagcaagagagacacaTTTCAAATtctcatttaataaaaatctcttTACATCAAAGCCTGCAGAATTGTACAGCTGAGTGACTGGGTGTTTTACAGCAGGAGGCCGGCTGCAGTTGTGGGGTGTGGCCACGCAGAGCTGTGCAGAGTTCTGCATAGTCCTGCCCAGCACAGTTTAGTGATTCCTCTGCTACACCTGCTGAGTGACGACTCTGGTGTCTCTAAGCAATGAAACTAAGACTACATCTTCCCAGTGCTTGTACTGTGTGGAATTCTGCCCTCTGTTGCAGACCCCTGGGTTACACAGTGATGACAGCCTTACAGGTGCAGAAAGTggacacacactccacacacactcatccacagaGCTGCGGCTGCTCTCTTCCCTTTACACATCTACggtttctgtatgtgtgtgcatgtgtatatatatatatatatatgtcagcAATCGCACCcacccccctccctccctccctcccaaCCGCCCCACATTATGGGTCCTGTacaaaattgaattaaaacaaacacacacacttgaagaTGTACAttcagaacaaacacacacctcaccatTCACACAaaaccactacacacacacacgcacacactctctatCAGCAGTATGTGTTATTGAAACACCCCAGTAACAACTGAATGCATAAAAAGGGCACTTGCACTGCAGGATGGCTTCATGTGTGCATTTCATTCCTGTATTAAAAACTGTAACAATCTGAAGTTCTACTTCGTTTTAAACTCGGTTAAAATCGTGCATacaagaaagtgtgtgtatacagtatatgctgtTTCTGAGGTGTTTAACACAATGAGTCTATGACTCATTTTATTAAAAGGTGTgaatagtgtgtagtgtaacaGACAGCCTGAAGGACCAATCTGAATCAGGCACATCTTAACAAGGCCTTCACTAGTCAACAGACTGCTGATAGCAGTGAGTAAGTTGCCGTGGTGTTTGTTTTGCTggtgacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggttTCCAGTTTGCTGGTAACaggtaacagtgtgtgtatgaatgggTGTTAGCGTGGTGTCCAGGTTGCTggtgagacagtgtgagtgtaggtgtgtgttgcAATGATATCTGGTTtgctggtgagtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgcccatctagggtgtattctggcctcacacccagtgttcttgGGACAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121062 True 1495 lncRNA 0.44 2 20395867 20397389
TU121063 False 1466 lncRNA 0.44 2 20395867 20399958

Neighbor

gene id symbol gene type direction distance location
ttc36 ttc36 coding upstream 35672 20358213 ~ 20360195 (+)
treh treh coding upstream 280450 20097695 ~ 20115417 (+)
si:ch211-151h10.2 LOC108264443 coding upstream 550030 19835533 ~ 19845837 (+)
prdm10 prdm10 coding upstream 560438 19801828 ~ 19835429 (+)
LOC113526906 LOC108264037 coding upstream 607975 19782594 ~ 19787892 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 173323 20573281 ~ 20630604 (+)
dner dner coding downstream 235070 20635028 ~ 20657916 (+)
sphkap sphkap coding downstream 373646 20773604 ~ 20819328 (+)
foxa3 foxa3 coding downstream 460824 20860782 ~ 20864194 (+)
pld3 pld3 coding downstream 506105 20906063 ~ 20924289 (+)
G102124 NA non-coding upstream 340635 20055032 ~ 20055232 (+)
G102108 NA non-coding upstream 396193 19999392 ~ 19999674 (+)
G102106 NA non-coding upstream 397784 19997871 ~ 19998083 (+)
G102098 NA non-coding upstream 412720 19982947 ~ 19983147 (+)
G102089 NA non-coding upstream 423748 19971693 ~ 19972119 (+)
G102286 LOC107557830 non-coding downstream 22063 20422021 ~ 20464632 (+)
G102325 NA non-coding downstream 73384 20473342 ~ 20473737 (+)
G102327 NA non-coding downstream 75846 20475804 ~ 20476171 (+)
G102370 NA non-coding downstream 178660 20578618 ~ 20581945 (+)
G102374 NA non-coding downstream 206644 20606602 ~ 20607594 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 302935 20076965 ~ 20092932 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other upstream 342725 20004356 ~ 20053142 (+)
cdon cdon other upstream 426080 19920049 ~ 19969787 (+)
G101602 NA other upstream 1271990 19122612 ~ 19123877 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other upstream 1273370 18957428 ~ 19122497 (+)
pid1 pid1 other downstream 238802 20638760 ~ 20686188 (+)
irf2bp1 irf2bp1 other downstream 444716 20844674 ~ 20849338 (+)
prx NA other downstream 539455 20939413 ~ 20967271 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other downstream 626069 21026027 ~ 21102216 (+)
zbbx zbbx other downstream 1362489 21762447 ~ 21813210 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1922862 NA non-coding NC_048588.1 CM023242.2 30455427 ~ 30457240 (+)