Gene
RNA
| Item | Value |
|---|---|
| gene id | G102370 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 20578618 ~ 20581945 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU121162 | True | 786 | lncRNA | 0.44 | 2 | 20578618 | 20581945 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ttc36 | ttc36 | coding | upstream | 218423 | 20358213 ~ 20360195 (+) |
| treh | treh | coding | upstream | 463201 | 20097695 ~ 20115417 (+) |
| si:ch211-151h10.2 | LOC108264443 | coding | upstream | 732781 | 19835533 ~ 19845837 (+) |
| prdm10 | prdm10 | coding | upstream | 743189 | 19801828 ~ 19835429 (+) |
| LOC113526906 | LOC108264037 | coding | upstream | 790726 | 19782594 ~ 19787892 (+) |
| dner | dner | coding | downstream | 53083 | 20635028 ~ 20657916 (+) |
| sphkap | sphkap | coding | downstream | 191659 | 20773604 ~ 20819328 (+) |
| foxa3 | foxa3 | coding | downstream | 278837 | 20860782 ~ 20864194 (+) |
| pld3 | pld3 | coding | downstream | 324118 | 20906063 ~ 20924289 (+) |
| si:ch211-14c7.2 | LOC108264030 | coding | downstream | 389644 | 20971589 ~ 20985096 (+) |
| G102327 | NA | non-coding | upstream | 102447 | 20475804 ~ 20476171 (+) |
| G102325 | NA | non-coding | upstream | 104881 | 20473342 ~ 20473737 (+) |
| G102286 | LOC107557830 | non-coding | upstream | 113986 | 20422021 ~ 20464632 (+) |
| G102285 | NA | non-coding | upstream | 178660 | 20395867 ~ 20399958 (+) |
| G102124 | NA | non-coding | upstream | 523386 | 20055032 ~ 20055232 (+) |
| G102374 | NA | non-coding | downstream | 24657 | 20606602 ~ 20607594 (+) |
| G102415 | NA | non-coding | downstream | 348242 | 20930187 ~ 20934094 (+) |
| G102585 | NA | non-coding | downstream | 422391 | 21004336 ~ 21004721 (+) |
| G102703 | NA | non-coding | downstream | 567139 | 21149084 ~ 21194404 (+) |
| G102903 | NA | non-coding | downstream | 922799 | 21504744 ~ 21505622 (+) |
| ddx6 | ddx6,LOC107691843,LOC107670620,LOC107572719 | other | upstream | 485686 | 20076965 ~ 20092932 (+) |
| bcl9l | bcl9l,cxcr5,LOC108264003 | other | upstream | 525476 | 20004356 ~ 20053142 (+) |
| cdon | cdon | other | upstream | 608831 | 19920049 ~ 19969787 (+) |
| G101602 | NA | other | upstream | 1454741 | 19122612 ~ 19123877 (+) |
| sema4ba | sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 | other | upstream | 1456121 | 18957428 ~ 19122497 (+) |
| pid1 | pid1 | other | downstream | 56815 | 20638760 ~ 20686188 (+) |
| irf2bp1 | irf2bp1 | other | downstream | 262729 | 20844674 ~ 20849338 (+) |
| prx | NA | other | downstream | 357468 | 20939413 ~ 20967271 (+) |
| LOC113526807 | sptbn4,LOC107670604,LOC107672319 | other | downstream | 444082 | 21026027 ~ 21102216 (+) |
| zbbx | zbbx | other | downstream | 1180502 | 21762447 ~ 21813210 (+) |
