irf2bp1 (irf2bp1)


Basic Information

Item Value
gene id irf2bp1
gene name irf2bp1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20844674 ~ 20849338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121203
acttttatttagcatttctgaTTCCCAGTAGTAGATTTATCTCAAATACAACATATGACAAATGATTAGTCTGAATGAATGTCCTACAAATACATATTAGCAAAAGGTTTATCTACAGTTTTCCTTGTGTCAAATATAATTGATCAGCCAAGACTGATATTTTGCAGTGGAGCTACAAGTCTAACAACTAACTGAACTTTATCTCACCCAAAATTCTGTAAATCCAGTTTGAAATACAGCCTGGATGAGACACTAGtcactaaatgttttataatgtttcttggttgattgactacatttggcAAAAGGATTTGCTTTTGATTTCTGTTTCTCCCACCTGTTTCAGCAGCCACAACAGCACTAAAGTAGGGCATGTGCCGATGATAGATATGCATATTGCATTAATTgcgtagtctttttttttttatcatggtttataatattataatgataCTGTATTCTTTAACTACTCATTCATCAGTTGAAACAACTGTCCTgtctttcatatttttattatctgaCCAAAATTATAGACAGTTGTCTTAAACAAGGTATACAACTGTCCTTACACTTGCAcagatttgatttaaaaaaaaaaaaaaaaaaagccacctaTTTAGGTCTTTTCGATCGGGATGTTGTCAAATATTGCAATATGTCATATCACAACCAGTggtttttattaaatcattgaTCATTGGCTCATGCCTAGTGTTGTGACATTCTTTTGTATTttggtcaaacacacacacacacacacatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgctaCATTAAGAGTGCATGTATagtagaaatatttatattttatacaatatagATTGTAAGAAATATTTGCTGTTAATGGTTATTAGATGTGCAATTTCTATAAATTTGATAccacaaacaaaaccaaagatAGACGTGCTAAaacttattatatattacatgttatattacattatatatatatgacactttatatatagaaaacagcataaaagcaacataaaaacatggcttttgttaaataacagcaccaTTGGTGGGAAATGGTTCACgtaattatatttaatcatgAACACAGATgttgttcttattaaagtgttAGCCGATCAGTATATTTTGTATTCTAACACTGTTGAGTTGAagatattctttttttttttttttaattttctacaatTGTTATTATAGTCTGGATATTTTTCCATGtaagaattttcttttttttttaaattttattattactccTTTCCTTTTACATGTTCTGGTATGTTTAGTCCTCACCTCTTCAATTCTGTTTTATGAATAGAAAATGTATCTCTGGAcaaatgtgtgtataaacagAAGCACTGTTTTGTTTAATCAGCTCTTGGattgtatttaaattaaaaggtgacctgcttttcacttacacacacattcgctTTGTacaatcacttaaaaaaaacttttcttgaGGGgaaattcaaatgtttttattaaatacatc
>TU121205
acttttatttagcatttctgaTTCCCAGTAGTAGATTTATCTCAAATACAACATATGACAAATGATTAGTCTGAATGAATGTCCTACAAATACATATTAGCAAAAGGTTTATCTACAGTTTTCCTTGTGTCAAATATAATTGATCAGCCAAGACTGATATTTTGCAGTGGAGCTACAAGTCTAACAACTAACTGAACTTTATCTCACCCAAAATTCTGTAAATCCAGTTTGAAATACAGCCTGGATGAGACACTAGtcactaaatgttttataatgtttcttggttgattgactacatttggcAAAAGGATTTGCTTTTGATTTCTGTTTCTCCCACCTGTTTCAGCAGCCACAACAGCACTAAAGTAGGGCATGTGCCGATGATAGATATGCATATTGCATTAATTgcgtagtctttttttttttatcatggtttataatattataatgataCTGTATTCTTTAACTACTCATTCATCAGTTGAAACAACTGTCCTgtctttcatatttttattatctgaCCAAAATTATAGACAGTTGTCTTAAACAAGGTATACAACTGTCCTTACACTTGCAcagatttgatttaaaaaaaaaaaaaaaaaaagccacctaTTTAGGTCTTTTCGATCGGGATGTTGTCAAATATTGCAATATGTCATATCACAACCAGTggtttttattaaatcattgaTCATTGGCTCATGCCTAGTGTTGTGACATTCTTTTGTATTttggtcaaacacacacacacacacacatatatgtatatatatatatatatatatatatatatatatgtgtgtgctaCATTAAGAGTGCATGTATagtagaaatatttatattttatacaatatagATTGTAAGAAATATTTGCTGTTAATGGTTATTAGATGTGCAATTTCTATAAATTTGATAccacaaacaaaaccaaagatAGACGTGCTAAaacttattatatattacatgttatattacattatatatatatgacactttatatatagaaaacagcataaaagcaacataaaaacatggcttttgttaaataacagcaccaTTGGTGGGAAATGGTTCACgtaattatatttaatcatgAACACAGATgttgttcttattaaagtgttAGCCGATCAGTATATTTTGTATTCTAACACTGTTGAGTTGAagatattctttttttttttttttaattttctacaatTGTTATTATAGTCTGGATATTTTTCCATGtaagaattttcttttttttttaaattttattattactccTTTCCTTTTACATGTTCTGGTATGTTTAGTCCTCACCTCTTCAATTCTGTTTTATGAATAGAAAATGTATCTCTGGAcaaatgtgtgtataaacagAAGCACTGTTTTGTTTAATCAGCTCTTGGattgtatttaaattaaaaggtgacctgcttttcacttacacacacattcgctTTGTacaatcacttaaaaaaaacttttcttgaGGGgaaattcaaatgtttttattaaatacatc
>XM_026914092.2
CAGAGTTGTGTAACTTTCCAGCTTCTTCCAGGCGAAAACTCTCGCGGCcgtagctagttagctagccacATCGGCTAAAATAGAAACATCGACTTAGTTTCGTTCTGGATGTTTAGGAAAAGTTCATTTTGTGGATAAAGGTGGACGGTTTTATCACTCGGACAGGACGAggtgaaaaagagaagaagagaaaagagacaaaagaaaaTCGGGGGCGGATCAGAAATCAAACatgtcctcctcttcctcctcgcAGGCATCTTCCAGGCGGCAATGGTGCTATCTCTGCGACTTACCCAAGATGCCTTGGGCCATGATTTGGGATTTTAGCGAAGCTGTGTGTCGCGGGTGTGTGAATTATGAAGGTGCAGACAGGATAGAAATGCTAATAGACACGGCGAGACAGCTCAAACGCACCCATGTGATGCAGGACGGAAGGTCTCCAGGTCCCCAGCCGGGTGGTAAACACGGCCCTGGGGCGAAAGATGGCGCACTGGATGGGGGCAGAAACACTGCTGAGCGATTTGAAAGGAGCAGAGGAGACTTTGTACCTGCTAGACTTCCCAATGGACTGCCCAGGTTGGAGGATGGTGCTGTTGCAGAGGTTAGCAGGCAAAGTCCCAATGCGAGGAGGACGATGGTGGCAGGTGTGTCACCCAATTTGATGGCCCAAGGGATTGTGGGTACACCGCATGGCCTCCTGATCGGCGCCAGGTCCAGCGGTCCACCGCTGGCCATATCTGCCCCAATGTTGAGCGAACTTGGGAAGAGACAGGCGCTGGGTGTTGGGATGTCGTTCATGAGCTCAGACTTTGAGAAGGATCTGAAGGAGAAACAGAGGAATGCTGAAGAACTTTCCGAAAGTGTCCGGAACCGAGCTGATGATTGGGCTGGACGTCCCAAATCTGTGCGAGACACTTTGCTGGCGCTTTCCAACTGCGCACCGTTCAACGTGCGCTTTAAGAAAGACCATGGCCTTGTCGGGAGGGTGTTTGCGTTTGACGCCAAGCTTGGTGTGGATTTTGAGCTCAAGGTGTTTGTCGAGTACCCGTGTGGCTCAGGCAACGTTTTCTCCAGCCTGCTGGCGTTGGTGAAGCAGATGTTCCAGGATAGCCAAAAAGACTCAGGCAAAGTGATCAGCTCGGGCTTCAAATACATCGAATATGAGAAGCGGCATGGCACCAGCGATTGGCGTCTCCTTTCTGAGCTACTCAGCGACGCTGTTCGGGCATTTAAAGAACCGCCAGCCCCTGATTCACTCCCTCAACCTTTCGTGGATGCTGCCTGTGCCATGTTACCCACTGCGCTCTGCCATCTCGGACGTCCTGGCCAAGCTCGAATGCGGCGCCGAAAAGCTTCTCCGGATCCGGATGGCGCTGAGAGGATGCCCTCAGAGGAGCAATTACGCCAGCATTGGTACCCTGGCATGAGCGCCCACATTCCCACCAGTTCTCTCGCCAGCGCTATGCCTGGCCAGCCTCCAAATCTCCAGGAGGTGGTTCCTGTTTCCCATGGCAGTGATCCTTCACCTATCAGCGCCCTCATGAGCGTTGCAGACAACGTTGGTGCCATCAGCCAATCGCCAAAAGACATGCCGGGAAGCAGTGGCGCCCACGCTTCCAGCGCTAGCCCTTCTTCATCTGGGCAAAGGCGACTGGCATCACGTAACGGTGAAAATGGGTCGGGAACAGCCGCGGTTGCCACAGCAATGCCCCCAGGTGCAGCGGCAGACCAAGGATCTGAAATCTCTGGAGCATCTGGACCTCCTCTTTGTTGCACCATTTGCCATGAAAGGCTTGAGGATACACACTTTGTCCAGTGCCCTTCAGTACCCGTGCACAAGTTCTGCTTCCCTTGTACCAGAGAATTCATCCGTAATCAGGGCTCAGGGAGTGAGGTGTACTGCCCAAGTGGTGATAAATGCCCACTGGTGGGCTCCAATGTACCCTGGGCATTCATGCAGGGGGAGATTTCCACCATCTTGGCTGGAGATGTCAAAGTCAAGAAGGAGAGGGACCCTTAATTCGAAGCAGGAAGTTGCAGTTCCTGAACCCCAAAGATGACCGACGCCACAGCACTGAAGAGACGACTGTTCACATGCACACGTCCTCTTCCTCCAATTATCTCATCCCTCTGTCCACGATGAAGAATCcttacatccatccatccatccacccatccatcctcATCAGTGTTGAGGAATATTTCCTCTGtgtctccatcttttttttctgtctgttattctgtctACCACATCTTCTGCCCATAATAAAATCAACCATCCTTCATCTCTGTCTTTTGCTCTATCCTCTTATCACttctttacctctctctctctctctctctctctgtctctctctcagtctttctctctgtcttctcatCCCACAACCTTTATTTCTGTCCTCTCATTAGTTATTTTGCTCATTCTCTTTCTATCCTCTCCCctcctcattttctctctctctctctcgctctctctctctctatctatctatctatctttctttctgttactCCCCTTATcagttcatttcaattcaatttatttcagTAAGTTTAGTGCTTTTATCAAGATGGCCCTTTTCCTTTTCACTCGTCTCATCTTCTTTCATTCCTCAATTAATGCCTTTTAATGGACAATCAGTTagatttgttttgcttttttttcccccaccccAACATCTAATAGTGCTTTACTGCAGAgctaaatcattttatttagggttttaaaatccttttttttttttttttacttttatttagcatttctgaTTCCCAGTAGTAGATTTATCTCAAATACAACATATGACAAATGATTAGTCTGAATGAATGTCCTACAAATACATATTAGCAAAAGGTTTATCTACAGTTTTCCTTGTGTCAAATATAATTGATCAGCCAAGACTGATATTTTGCAGTGGAGCTACAAGTCTAACAACTAACTGAACTTTATCTCACCCAAAATTCTGTAAATCCAGTTTGAAATACAGCCTGGATGAGACACTAGtcactaaatgttttataatgtttcttggttgattgactacatttggcAAAAGGATTTGCTTTTGATTTCTGTTTCTCCCACCTGTTTCAGCAGCCACAACAGCACTAAAGTAGGGCATGTGCCGATGATAGATATGCATATTGCATTAATTgcgtagtctttttttttttatcatggtttataatattataatgataCTGTATTCTTTAACTACTCATTCATCAGTTGAAACAACTGTCCTgtctttcatatttttattatctgaCCAAAATTATAGACAGTTGTCTTAAACAAGGTATACAACTGTCCTTACACTTGCAcagatttgatttaaaaaaaaaaaaaaaaaaa

Function

symbol description
irf2bp1 Predicted to enable transcription corepressor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human IRF2BP1 (interferon regulatory factor 2 binding protein 1).

NR:

description
PREDICTED: interferon regulatory factor 2-binding protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU121203 False 1537 lncRNA 0.28 2 20847774 20849338
TU121205 False 1513 lncRNA 0.29 2 20847774 20849338
XM_026914092.2 True 3361 mRNA 0.47 2 20844674 20848380

Neighbor

gene id symbol gene type direction distance location
sphkap sphkap coding upstream 25346 20773604 ~ 20819328 (+)
dner dner coding upstream 186758 20635028 ~ 20657916 (+)
trip12 trip12,LOC107679016,LOC107710892 coding upstream 214070 20573281 ~ 20630604 (+)
ttc36 ttc36 coding upstream 484479 20358213 ~ 20360195 (+)
treh treh coding upstream 729257 20097695 ~ 20115417 (+)
foxa3 foxa3 coding downstream 11444 20860782 ~ 20864194 (+)
pld3 pld3 coding downstream 56725 20906063 ~ 20924289 (+)
si:ch211-14c7.2 LOC108264030 coding downstream 122251 20971589 ~ 20985096 (+)
kcnk6 LOC108264595 coding downstream 141646 20990984 ~ 21003744 (+)
shkbp1 shkbp1,LOC107692479,LOC107656962,LOC107724139 coding downstream 259575 21108913 ~ 21124986 (+)
G102374 NA non-coding upstream 237080 20606602 ~ 20607594 (+)
G102370 NA non-coding upstream 262729 20578618 ~ 20581945 (+)
G102327 NA non-coding upstream 368503 20475804 ~ 20476171 (+)
G102325 NA non-coding upstream 370937 20473342 ~ 20473737 (+)
G102286 LOC107557830 non-coding upstream 380042 20422021 ~ 20464632 (+)
G102415 NA non-coding downstream 80849 20930187 ~ 20934094 (+)
G102585 NA non-coding downstream 154998 21004336 ~ 21004721 (+)
G102703 NA non-coding downstream 299746 21149084 ~ 21194404 (+)
G102903 NA non-coding downstream 655406 21504744 ~ 21505622 (+)
G103130 NA non-coding downstream 1199836 22049174 ~ 22049382 (+)
pid1 pid1 other upstream 158486 20638760 ~ 20686188 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 751742 20076965 ~ 20092932 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other upstream 791532 20004356 ~ 20053142 (+)
cdon cdon other upstream 874887 19920049 ~ 19969787 (+)
G101602 NA other upstream 1720797 19122612 ~ 19123877 (+)
prx NA other downstream 90075 20939413 ~ 20967271 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other downstream 176689 21026027 ~ 21102216 (+)
zbbx zbbx other downstream 913109 21762447 ~ 21813210 (+)
LOC113526422 p2ry6 other downstream 2093371 22942709 ~ 22983599 (+)
relt relt other downstream 2263746 23113084 ~ 23148872 (+)

Expression


Co-expression Network