G102444


Basic Information

Item Value
gene id G102444
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20471871 ~ 20472745 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121277
gattatGCAccatttctaggtccctatttataTGTAAGAAAATTTGTATTTCTGACCATGTTaaatgctttgtacaaaaggtcagattttacTCATGCATAATCTCTTGTACTGAAgaatgtgttcagacgacactccgatggatttggtctaaaatggatcataaggttttgcacaaacttgtggagtccatgccggctcgagtgcacactgtctttatagcaaaaaggggacatatcaaatactaagaaactgtttctaaagaaaatgtttcaaagattctacttttcactcactTCATTGTTGTCactaatataatttgtaatgaaaatgtaatgaaaatgaaaattacatcattttcactagtggtctcagacttttggaccccactgtaagTGAGTTTATAGTGAGTTTAAAATGCACGGAGGAGTGGACATTGATGCCTCTACAAGTTTCCAACCTTGTAAGGCAATACAGGAAGAGACTtagttctgtttttctctccaggGTCGGTGTCataaaatattgattaattaaaCCAGTGTTTTCAAGAAAAATACATATCCCTGTATGCTTgggctcaaaatatcacttgaTGCATGTATTGTTCTTTTTATATAgtgatttttgttcattttcttgaCGAGTGATTATTCTGAAtagtactgtaaataaaaaacatttagggGAGAACTAGACAGAGGTAAATACACTAAACAAATCAATGACTAGATGATGACAAAGACTTGACAAAAGttgccaaaaacaaaaagcatatgATACCTCACCTAATGTTACTGACATGAAGGTCTATAACTGTATATGATGTAAAAAGTTATGGAGTTACAGCTGATCTTTTATGCAAGGTTATGTCA

Function

GO: NA

KEGG:

id description
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
TU121277 True 875 lncRNA 0.34 1 20471871 20472745

Neighbor

gene id symbol gene type direction distance location
foxg1c NA coding downstream 782 20470360 ~ 20471089 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 7186 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 18724 20422273 ~ 20453147 (-)
ccnp NA coding downstream 82238 20382810 ~ 20389633 (-)
si:ch211-132b12.7 NA coding downstream 94539 20362330 ~ 20377332 (-)
pglyrp5 LOC108264553 coding upstream 434 20473179 ~ 20476270 (-)
polr2i polr2i,rpb9 coding upstream 8081 20480826 ~ 20484801 (-)
rasa2 rasa2,LOC108264552 coding upstream 16795 20489540 ~ 20536022 (-)
zbtb38 LOC108264297 coding upstream 68898 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 93995 20566740 ~ 20572429 (-)
G102434 NA non-coding downstream 112330 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 115274 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 180880 20244335 ~ 20290991 (-)
G102271 NA non-coding downstream 208731 20257332 ~ 20263140 (-)
G102225 NA non-coding downstream 378069 20092984 ~ 20093802 (-)
G102449 NA non-coding upstream 5588 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 21512 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 105945 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 166126 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 522780 20995525 ~ 21003780 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 55297 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 491612 19980069 ~ 19980259 (-)
G101178 NA other downstream 2275065 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5114308 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6124863 14335936 ~ 14347008 (-)
G102566 NA other upstream 480857 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 522596 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1758703 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3118200 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3175939 23648684 ~ 23699707 (-)

Expression


Co-expression Network