G102449


Basic Information

Item Value
gene id G102449
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20478333 ~ 20478556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121282
aaaaccctcttgGTTTGGCATTAGTTGTTATTCAGGCAAGTCAATCATGGGTGCAGTTATGTTATTTTGCCATGTATGTTCAGCTATCTGCGTTAAATATGTCATTTGTGTATGTTAAGAAAATTTGCCAGCGCCtcacaaatataaaattgtttaaCTACAAGCTACAAGATTAAAAACAGTAGTGACACCTCACTACTagaatatatactatatagccaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121282 True 224 lncRNA 0.33 1 20478333 20478556

Neighbor

gene id symbol gene type direction distance location
pglyrp5 LOC108264553 coding downstream 2063 20473179 ~ 20476270 (-)
foxg1c NA coding downstream 7244 20470360 ~ 20471089 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 13648 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 25186 20422273 ~ 20453147 (-)
ccnp NA coding downstream 88700 20382810 ~ 20389633 (-)
polr2i polr2i,rpb9 coding upstream 2270 20480826 ~ 20484801 (-)
rasa2 rasa2,LOC108264552 coding upstream 10984 20489540 ~ 20536022 (-)
zbtb38 LOC108264297 coding upstream 63087 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 88184 20566740 ~ 20572429 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding upstream 342250 20820806 ~ 20845204 (-)
G102444 NA non-coding downstream 5588 20471871 ~ 20472745 (-)
G102434 NA non-coding downstream 118792 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 121736 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 187342 20244335 ~ 20290991 (-)
G102271 NA non-coding downstream 215193 20257332 ~ 20263140 (-)
G102453 NA non-coding upstream 15701 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 100134 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 160315 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 516969 20995525 ~ 21003780 (-)
G102691 shkbp1 non-coding upstream 644759 21123315 ~ 21124955 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 61759 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 498074 19980069 ~ 19980259 (-)
G101178 NA other downstream 2281527 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5120770 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6131325 14335936 ~ 14347008 (-)
G102566 NA other upstream 475046 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 516785 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1752892 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3112389 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3170128 23648684 ~ 23699707 (-)

Expression


Co-expression Network