G102453


Basic Information

Item Value
gene id G102453
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20494257 ~ 20496301 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121286
atacTAGTCCTGTACAAGCAATGAGTGATTTTGCTAAGCAAATAGTGTCATTTAAATACACTACAAGATCAATATATCATAAATTACAGCTGTTAGTTAACTAATTTTAGCTAAGATATTATCTTTTGCGAACCTAGCTAGAGACGTTGAGGGGGAAGATTAGGTACCAGAAGGATTGAACAATTTTATaccaaacaaattaaacaaatttttagCATTCTGATACTTTTTCCTAGTAGGCTGGGGGACTGCTGCACTGTTTAAAATTAATAACTTCAtcaaacaaagtaaaatgatgTAATTGGGCTGTCTATAGGTGGTCTCTGAGTCATCTGATGAAATTAAACATCCTATCCTATTAGATAGAGTACACATTAGCCAGATCTCCCAGATCTCTGCAGATCAAGAAGACCTTTGATAACCTTTCAAATTCTACAACTTTAGCACAAAATGATGCAAAGTTCTGTAAAGTTATAATGCATTAGTTCTAATAGAAAAGGAACATTGTAACCATGAATTAGATTTATTTGGATTTGCTTGTCTACTtctaaaattcaattcaattcaattcatttttatttgtatagcgctttttacaaaggtcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgtgccgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagtacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaaggggggggaggtctggattaccagcagctcaggagtgtagctcggcagaaggagaaggaaagtggttaggtacactcaaaGGTGGAAGGAACGGGTTCGAGTGGTTAAATAGCATATTTCAACTGCTAGATAGTGCCATTATATACCAGTTTCCACAGTTTGGAGTAACAAATTAACCACACAGTGAGTCACAGGCTCCAGTGCACTTAGCTCACTGTTTTGACTAGGGCTGGCACTCAACGCACACTTTTTGTGATTAATCACACGAATAATCACATATTTAATCACACAGcgaaaaacataaaatgtaagtGTTTAACTCcatgagttttatttattcctaGTGATAGATCTGAACACAGagataaaatgcataaaaaatactgtacattttcagcACAATAGAATAACAGTGCTTCACACAGGTAGTGCATTTCCAGTGATAGACGATAGTCTTACAGTTGTTTTTATTGTCCGCTGAAATAATATGCTtataatgttcattaaattttcattaaaatagtACATTATATGTGGCATATTACCATTAACACATAATGCtagctagtgtttttttttcaacagctGGAATACTCATCTACAGCTATACAGACCTCAGTATTATAAGGTGCTATCCACCATTTAATCCTATCTTAGATAGCACTTTATGATACTAACCTTATAATACAAACATAACTTGTGCTTCTCACATTTGGCTCgaataaaactgtttaataaTGTTCAAACAGAACAACATAACAGTTATCTGTGTAATATGCGGTCATAGCGAGGTAGTTTTGGTTGTGAGAGATATCATAAGTCATCCATCTAGAGTGCTGATTTAAATGGTAGGTTCAAGACATCGTACGTCTGTGATACTTAAATTCGCAGAGACAAAGATTGCTAACCTTCTTCTTTATAGATTCTCTATTTTAATTTCCACCCTACAGTAACcataaaaacccaaaaaaaacaggactACCTGAGTACAGAAACAATAGCCTATGATTTTAAAAGCACATTGTCctagtgtctgtgtgtacctTACTAGCCGATGGCTTTGCAATGGCTGTGCATTAATgcgattaaaaaaattattatgcattatgattttaaaatgaatcacGTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121286 True 2019 lncRNA 0.36 2 20494257 20496301

Neighbor

gene id symbol gene type direction distance location
polr2i polr2i,rpb9 coding downstream 9456 20480826 ~ 20484801 (-)
pglyrp5 LOC108264553 coding downstream 17987 20473179 ~ 20476270 (-)
foxg1c NA coding downstream 23168 20470360 ~ 20471089 (-)
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 29572 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 41110 20422273 ~ 20453147 (-)
zbtb38 LOC108264297 coding upstream 45342 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 70439 20566740 ~ 20572429 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding upstream 324505 20820806 ~ 20845204 (-)
LOC113526481 NA coding upstream 428677 20924978 ~ 20929950 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding upstream 516934 21013235 ~ 21020541 (-)
G102449 NA non-coding downstream 15701 20478333 ~ 20478556 (-)
G102444 NA non-coding downstream 21512 20471871 ~ 20472745 (-)
G102434 NA non-coding downstream 134716 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 137660 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 203266 20244335 ~ 20290991 (-)
G102472 NA non-coding upstream 82389 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 142570 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 499224 20995525 ~ 21003780 (-)
G102691 shkbp1 non-coding upstream 627014 21123315 ~ 21124955 (-)
G102809 NA non-coding upstream 813002 21309303 ~ 21312468 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 77683 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 513998 19980069 ~ 19980259 (-)
G101178 NA other downstream 2297451 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5136694 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6147249 14335936 ~ 14347008 (-)
G102566 NA other upstream 457301 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 499040 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1735147 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3094644 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3152383 23648684 ~ 23699707 (-)

Expression


Co-expression Network