G102472


Basic Information

Item Value
gene id G102472
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20578690 ~ 20581168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121318
tggaatttttcttttttacagttTTCCTGTGTGGAGTGAACGatatctctcactgtctctgtggtGATAGTCATCAAACGGCTTGGATTTCAGCAATCAGACgtaaaaacatcacattttacagcaaaatgaaTCCTATCAGAGCTACTCCCTGTATTATTCTTCCAATGCCTCACTGTTGTTtactttaaatgaatgaattacttTTGCATGCATGTTATATATTGTGTCCtattcacactctctctctcacatacacacaagtacGCTCTCGTTCAGCCACTCTATCTctgtttatattattacacagttatttatatatatattttttacacagCCTGAGAGTGTAATGCCCGCGTTAACAGATGAGTGAAGATCGTGCGTGTTGAGGTGTTACAGCGTTAATTGTATCGCAGGAGAAACAGAGTGCAGGTCTGAATAAGAGCTAATCACTTTCAAAGCTTTGTTACTCTCATTCActgattttaatattcattctcCTGTCAGTCAGGCGACTTCATGGATTGCCTGAAAACCTGAGGAAAATGTAAGATGTAATGAATACACATCACACAGTTAATCATCTGTTTGTGAATTCCAGAAacataactttaaaaaataagtgcTTAAGccacacacaaaatattaaattagaaaaaaaaaaattaggcatGAAGTAGTTGTGCTTCTGTATCATTAGTCTGCTAAGTGTTTAGAGGTTTGTAACTCTAAttagactgatttttttttttccctcaccaaAATGTCATGCTTTTCCCTCCTTGAAAGGTTTATCCATATAAAATTCTACATGTTCTCCCTCAATCATGTCATGCAGTGTTTGTCACAAccaaatcacactttttttagGTAGAGAAAACTGAACATGGAGTCCACGCAGACAACATGGCGGCTTGATCCCACAATGCAACACAACATATTGATTCCCAAGCTGCAGGTTTTGCTACTGAAAGCAcgggctgtgtctcaaatcaagCTCTTGTCTCAATATGTTGTGCACTAATCTGGGATTTTTCCAATACTCCACAATGTACCTTAAATCCTTAAGTGGAACCAAGTACCTTAAACCCCCAGGATGCATTGCACATCTAACTAAGAAGCtacaaatattgacttttaaaATATCAGACATCTCAATGTGCAGTGCTTCCACTAAACTAAGGTTTTATCAGGCTTCTCCAGCAAACTGCGCAAGAGCTCGGCATCAGACGAGAACCCAGGACTATCCGTGTCACGGCCAAGTGTGTGTATCGCATTCCCATCACATAGCTCTACCTGGGAAAGCAGGAGGAATTTATCTGGAGGTTATCAGGTGGTGACTTGATAGGTCTACGTAGCAAAATTCTTGAAATTcaaagaaatgatttttaaataaaacttgatataaatgtgtgtggtgctgctgcATTTTTTGCTCATGGAGTGAAAGTAAGCAAGAGACACAGCGCGTGCTTACGTCATAACAAACAATTATCACAAAACTTTAATGTTTAAACTTTTACTTAATGGCTGTCCAGCTTAGTGACAATACAGAGGAGTTTGAGTGCAAATTTTATCTgctaacaaatataaaataaacacacacacaaaaacaaggaGTTGTGTATTGTCTGGTGCCAACTCTCAATTGTTTTTGTGCACTATTTGTGAGTGCACTAGGTATGGCCCTCAGGTCCATTATGTTCTATGCTATGTAAAGCACAAACAGAGTCAGGAGGAAGATATTTGGGATTTGGCTCAACTAGAAGATGTAGAAACACCTTACTGTggataaatgaatacaaatgtgGTGAAACACTAAACTGCTGTTTAAAATGTTCAAGTTATTTAAATGACTGGCGTCTTTAAAAAGACACCAGAAGAAAGGGCTTTTGGAAAGAGGAGGAAACATTACACTAGCTACTACTGAAGTCGTCTGTGCTGGTAGATAAGCAACTCTAGGCAGAGACACTAATCAGGATGGTCTGTACTATTCTCATCTTCGCCCATTTATCCCAGCGCGACTCGCATGCTACCTGAATAAGAAGCGAAACCAGAATCAGCATGGATACTAAAGGACGGCACTGCCTGCTTGGTAGTGGAAACTGTGCGCACTCTGAGCTGAATATAAACAGCAGAGCCGAGCCACGCTGTCCAGCAGAGACGCGCGATTCTACACAACCGCTGTCCTTGATTATTTCACAAAGTGAACTTGTGGAAAAGACGGGTTTTAGGAGCAAAGTTTGGACATGCGTTTACTTACCTTGCTTTTGAAGCAGGtagtcagaaataaataaataaataaaaacagtgataGACGCTTTCGCTGCTAAGCATCCTGACCGTTACAAAGTCTCAGCAGGTTAGATGACTATGAATGAGGGAGTTTCAGTAactttcaaagtgttttatcgA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121318 True 2415 lncRNA 0.39 2 20578690 20581168

Neighbor

gene id symbol gene type direction distance location
fbxo36a NA coding downstream 6261 20566740 ~ 20572429 (-)
zbtb38 LOC108264297 coding downstream 14609 20541643 ~ 20564081 (-)
rasa2 rasa2,LOC108264552 coding downstream 42668 20489540 ~ 20536022 (-)
polr2i polr2i,rpb9 coding downstream 93889 20480826 ~ 20484801 (-)
pglyrp5 LOC108264553 coding downstream 102420 20473179 ~ 20476270 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding upstream 239638 20820806 ~ 20845204 (-)
LOC113526481 NA coding upstream 343810 20924978 ~ 20929950 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding upstream 432067 21013235 ~ 21020541 (-)
esrrd LOC108263916 coding upstream 546780 21127948 ~ 21137281 (-)
LOC113526809 ltbp4 coding upstream 567895 21149063 ~ 21249503 (-)
G102453 NA non-coding downstream 82389 20494257 ~ 20496301 (-)
G102449 NA non-coding downstream 100134 20478333 ~ 20478556 (-)
G102444 NA non-coding downstream 105945 20471871 ~ 20472745 (-)
G102434 NA non-coding downstream 219149 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 222093 20282185 ~ 20356597 (-)
G102458 NA non-coding upstream 57703 20638871 ~ 20686185 (-)
G102600 LOC108264595 non-coding upstream 414357 20995525 ~ 21003780 (-)
G102691 shkbp1 non-coding upstream 542147 21123315 ~ 21124955 (-)
G102809 NA non-coding upstream 728135 21309303 ~ 21312468 (-)
G102808 NA non-coding upstream 736972 21318140 ~ 21319552 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 162116 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 598431 19980069 ~ 19980259 (-)
G101178 NA other downstream 2381884 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5221127 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6231682 14335936 ~ 14347008 (-)
G102566 NA other upstream 372434 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 414173 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1650280 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3009777 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3067516 23648684 ~ 23699707 (-)

Expression


Co-expression Network