G102808


Basic Information

Item Value
gene id G102808
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21318140 ~ 21319552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121720
tgctatCAGAATTTTGTATTTGTTGAAAAAACGTATATTTACATGGTCATGTCCTGAACGCTAAACTCAGTAGGGGTAACGTATATTTAGTAGCCAGATCAAGGATGACTTATAATGGACATTGGACAATGTGCCTTTTTATGGGCTAATTTAAGCGAAGACAGACTGTATAATGGATGTGCTAGAATTTCACTGGTCAGTTGCTCAGAACCATCTAACTGTCATTCCAGAGTGATACAAGCAAAGCTACTGAAAGTAATCAAACCCCAGCCAAGCCTCACGTTGGGTGGAAATGTGAGTCAGTGCAAGAAGGTTGAGcaataaatggagaatgtttggAAATATGTCCTACAATTCCAACAAACTTGACATTTCATCCCACTGTACACAAGCAGATAAAAAAATACCATGGCCATCCATGGTGTTACCTTCTCCATGTCATCCCAGTTGGTGATAATGCCGTGCTCAATGGGGTATTTGAGGGTCAGAATGCCTCTTTTGCTTTGAGCTTCATCTCCTACATAGCTGTCCTTCTGACCCATACCCACCATcacaccTGATGGCGAGGCCTGCCAACGATGGAGGGGAAGACGGCTCTGGGAGCATCATCACCAGCAAATCCAGCTTTAACCAATCCAGAGCCGTTATCACACACCAGGGCAGTGGTTTCTTCTTCATCACACATCTTGACTCACACAGCTGAGGACCTACACacaagaaagacagaaagaaagaaataaagaaagggaaaatgaagaataaaaaaggaaaatgaagaataaaaataacaataaaaattaaagtatatgaatattaaatctaactgattccttaaaaatatgaaactccaatttttttaatatattttttgtttgatattttagatatttgaATTAACATGTAGGTTTACTAGAAGAGTTAATATGACTATGCAGTCGAAAAATAATGGGTTTTATTACATAGTACTTTATGAGGATATTAACCTTAGGTTTTACAAATTGACAAAAAGAGATaaagtaacaaaattaaaaactaaaaaagaccaaaaaagaTGATGAAAAGATAAACGTGAATAATGAGAAAAGTGAAAGTAGACGAATAAATGACTCACTTAGTAGAGGAGAAGAAGAGGCTCTTTCGCTCCCTTTAGAGAGTGGACGATGTGTTCACCTGCTCCCagtatttatacacacaccttCATGAAACCCACAACCTTTTTTGGACACaaagtctctctcactctctctctctctatgtgtggACAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121720 True 1268 lncRNA 0.37 2 21318140 21319552

Neighbor

gene id symbol gene type direction distance location
LOC113526809 ltbp4 coding downstream 68637 21149063 ~ 21249503 (-)
esrrd LOC108263916 coding downstream 180859 21127948 ~ 21137281 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding downstream 297599 21013235 ~ 21020541 (-)
LOC113526481 NA coding downstream 388190 20924978 ~ 20929950 (-)
daw1 daw1,LOC107727686,LOC107670581,LOC107576612,LOC107717604 coding downstream 472936 20820806 ~ 20845204 (-)
LOC113526680 cttn,LOC107711361,LOC107692464 coding upstream 148422 21467974 ~ 21492481 (-)
ppfia1 ppfia1 coding upstream 175570 21495122 ~ 21574846 (-)
LOC113526476 LOC108263963 coding upstream 304301 21623853 ~ 21634557 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding upstream 322086 21641638 ~ 21664327 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding upstream 1017208 22336760 ~ 22341441 (-)
G102809 NA non-coding downstream 5672 21309303 ~ 21312468 (-)
G102691 shkbp1 non-coding downstream 193185 21123315 ~ 21124955 (-)
G102600 LOC108264595 non-coding downstream 314360 20995525 ~ 21003780 (-)
G102458 NA non-coding downstream 631955 20638871 ~ 20686185 (-)
G102472 NA non-coding downstream 736972 20578690 ~ 20581168 (-)
G102983 NA non-coding upstream 250879 21570431 ~ 21652774 (-)
G103099 NA non-coding upstream 476221 21795773 ~ 21796243 (-)
G103156 LOC107737118 non-coding upstream 904033 22223585 ~ 22224021 (-)
G103158 NA non-coding upstream 904777 22224329 ~ 22224564 (-)
G103159 NA non-coding upstream 908076 22227628 ~ 22227863 (-)
sertad3 sertad3 other downstream 305040 20995341 ~ 21013100 (-)
G102566 NA other downstream 351230 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 901566 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 1337881 19980069 ~ 19980259 (-)
G101178 NA other downstream 3121334 18187447 ~ 18196806 (-)
si LOC108264758,LOC108431149 other upstream 911896 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 2271393 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 2329132 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 2413318 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 3160750 24480302 ~ 24574675 (-)

Expression


Co-expression Network