G102983


Basic Information

Item Value
gene id G102983
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21570431 ~ 21652774 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU121921
GGAAAAAAAGCAAACGTGGAGCCATTTTCCAAACTTTCGTGCACAAAAGTGAAGCATGAAGCATGGAATTGCGCAATCGAGCCGCAGTTTGGAAAGAACCGTGAATGCAAAACCTGCAattataagccccgcccccaaacaaGAGCACTCAGAATTGGTCGTGGGTGCGGACTTGAGTATTCGGACCAAGCGTGAGCCGCCCTAAGAGCCTAACCATTACGTACTTAGACGTGGGAGAATCTTAAAACAGCTGCACAAGCTGTATTTCTGGATTTAGGAACATGTTTGATGATTCAGAGTTGAATTCTTCAGCATCATGTCAGCAGACGTGTTTCTTGTATTGGTTTTGGCTCTTTATTCTGTGTGGAGCTGCTTAGAGGATGTTTTGTTTagattagcattagcaatgtAGTTCTCATTCAGTGGGAAAACTGGACCATTgatttgaaatatataaaaaaaaaaaaaacgctccgGTTCTCAGTTTCTGTCCAGGATTATTTTGGTGCTCAGTAGAAGCCGGCTACAGATGTGCACTCACAAGCTCAGTAACACCACATGTACACTCTGCCACAACAGCACAAGCACCTCAGCGGTCAGCTACTGAACAATCTTTAAACACTATCAccgtgattttttttcatttagcagTTTGTATTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121921 True 663 lncRNA 0.43 2 21570431 21652774

Neighbor

gene id symbol gene type direction distance location
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 77950 21467974 ~ 21492481 (-)
LOC113526809 ltbp4 coding downstream 320928 21149063 ~ 21249503 (-)
esrrd LOC108263916 coding downstream 433150 21127948 ~ 21137281 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding downstream 549890 21013235 ~ 21020541 (-)
LOC113526481 NA coding downstream 640481 20924978 ~ 20929950 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding upstream 683986 22336760 ~ 22341441 (-)
LOC113526884 NA coding upstream 1497334 23150108 ~ 23153649 (-)
LOC113526825 LOC108263933 coding upstream 1505958 23158732 ~ 23162309 (-)
aamdc aamdc,LOC107658908,LOC107660681,LOC107600309 coding upstream 1644581 23297355 ~ 23299010 (-)
aqp11 aqp11 coding upstream 1681403 23334177 ~ 23340381 (-)
G102808 NA non-coding downstream 250879 21318140 ~ 21319552 (-)
G102809 NA non-coding downstream 257963 21309303 ~ 21312468 (-)
G102691 shkbp1 non-coding downstream 445476 21123315 ~ 21124955 (-)
G102600 LOC108264595 non-coding downstream 566651 20995525 ~ 21003780 (-)
G102458 NA non-coding downstream 884246 20638871 ~ 20686185 (-)
G103099 NA non-coding upstream 142999 21795773 ~ 21796243 (-)
G103156 LOC107737118 non-coding upstream 570811 22223585 ~ 22224021 (-)
G103158 NA non-coding upstream 571555 22224329 ~ 22224564 (-)
G103159 NA non-coding upstream 574854 22227628 ~ 22227863 (-)
G103161 NA non-coding upstream 575611 22228385 ~ 22228716 (-)
sertad3 sertad3 other downstream 557331 20995341 ~ 21013100 (-)
G102566 NA other downstream 603521 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 1153857 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 1590172 19980069 ~ 19980259 (-)
G101178 NA other downstream 3373625 18187447 ~ 18196806 (-)
si LOC108264758,LOC108431149 other upstream 578674 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 1938171 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 1995910 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 2080096 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 2827528 24480302 ~ 24574675 (-)

Expression


Co-expression Network