G103140


Basic Information

Item Value
gene id G103140
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22128369 ~ 22170834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122086
cattaaacaggGACACCAGCTCTGAACCTCCTCACAGAGGTGTCTCTCCAGAACTACcttcaaacagacaaaatgcaccCTTTCTATCTCAGGGGTCAAACCAATTCACATGCACAGGGGAATGGaaatcatatatacataaataaatacaaaaataaacttatCAGTTGACACTAAAATTccaaataaattttaacatcaatattaccaaaaacaaatagcagaaataataaaacaatacatcttcataaactatattctaaataaacacaaaataaaacaatgaccCCCCAGCTCACACAGGCTCGAAAGACTAGGCCTACACTACCCATAATTCTTCAGGATAGCATAAAATGAGGAACAGGAAGGTCACACATCCTCTTAAACCCCACCCCTGGAACCATGCTGCAGCCATGAACTGAGACAAAAGGTTTCAAATCTGGACCCTGACCAGACCAAACCATGAGCCTGATGAACTTTTTGGTGGTCTTTGCAGAGTGGGCAGGAGtattgtcttgttgaaaaataacatctgatCGTTCCTCTTCAGAAAACAACTTTCCAAATGTGGGAGATCTTCGAAGACACCTCTCTGGAGCAACACCATGCAACTCAAATTGTGCTTCATCCCTCCACCCAACTCTGCTGAACCACTCTGAATCAAACTTTCCATATTCTGCCAAAAATTTAATTCtgtctttgatgtttttctgagacAGCAATCTCTTTTTAACACATCTTCTAGACACAAAACCTACAGTAGATAACCACTAGATAGGCctggcctttttttcttttttgctcgGGAGTGTATGTTGCATAGCAATGTATCAAACGTTCACTCAAATGCTGTGTATGTCACATTCTGAACAATGTATTTTAACAAAGCCCACATCTACCACTACACTATTTGAATAAGATTGATATGTAATAAATGGTTTTACCTCTTTTTTTGACATACTGAGCATTCCCCACAGCATGCGTAAAAGTGTGTACTTTTCACAACATATGATTAGACTTAGCTTCTCACAGTCTTTGCTGCAAACACAATCAGGCTTGCAAGTCACATGGTAACATGGTGTGGGAACATGGGTAttttgtataaatgtgtataaatgtgtataatttttaGGCTGAAATTTAGTTAGAAAAAATTGAGAATACAGAGATTTTTCCCGCCTCAATAGCCTAAATAATTATTCGTGTTATTCGCATTATCATGTGACTTGCAACCCTGCTTCTGtttgaagagaagagaagtttCATGAGCCCTGCAAGTCTAATCATATGCcctgaaaaacacaaagtttGTGCATGAAGTGGGTAACGCTCAATACGTTTAAAAAAGAGGTAAAGATTATTACATATCAATATTATTCAAACAGTATAGCGGTGGAGGTTAACAGAGTTAAAATACATTGCTGCAGAACATGACACAACACATtcaagtgaaagtttgatacaTTGATATGCTTGTGCACAAATGTTGATATTCAGTGTATAGAAGGTGCTACAGATTAGTTTcatgcaatttattttattttatttttatttttatttttttttgtaagactGGGTTgcattatcacattaatcactgcaaattgtcttaattttctcttttccatTATGAATTAGATTTATGGcataaagtttaaagtttaaatacactgtgtacattattattattattattattattattattattattattattattattattattattattaaaggataagctgaccatgCATGTGATGGTGTGCTAGTGATACAGCACACTTAGTTCATAATTTTAACTTCTTTCTAATAAAATTCAGTTCTCGagataaacaaattatttacagGGATgatatgattaattaattaatagagttatatgtatgtatttaatattgcttCTGAATGTCCTTTGGACTGAATATCGCTCCTCACTTAAGTCGATATTGGGCAAGAAAAATCTTAAGTTCAAGATTAGAGGCATGTGTAACTGAGAAACACCTCTGTTTTGCCCAGACTCTGCCCTGCATGAACAATTCTAGTACAACTTTCTAAAGAGTGAGTAAGTCTGTAATTATTGTATGTCAGAAGCCTGTATACCGATGTGTGC

Function

NR:

description
PREDICTED: G-protein coupled receptor 4-like

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU122086 True 2116 lncRNA 0.35 3 22128369 22170834

Neighbor

gene id symbol gene type direction distance location
LOC113526346 wdr49,LOC108264614 coding upstream 394798 21689428 ~ 21733571 (+)
pdcd10a pdcd10,LOC108410962,LOC107600227,LOC107686582,LOC103039132,LOC107662908,LOC108411198 coding upstream 446046 21664634 ~ 21682323 (+)
golim4a golim4 coding upstream 510033 21590626 ~ 21618336 (+)
LOC113526575 LOC108264858,LOC108440598 coding upstream 664937 21340396 ~ 21463432 (+)
LOC113526557 zgc:86725,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 803102 21318185 ~ 21325267 (+)
fam168a fam168a,LOC108264593,LOC107594362,LOC107600264 coding downstream 712437 22883271 ~ 22934025 (+)
LOC113526468 arhgef17,si:ch211-248g20.5,LOC107660677,LOC107658857 coding downstream 814575 22985409 ~ 23099891 (+)
trnak-cuu_22 NA coding downstream 992273 23163107 ~ 23163179 (+)
LOC113526446 LOC108264850 coding downstream 1089788 23260622 ~ 23267820 (+)
rps3 rps3,LOC102795110 coding downstream 1099259 23270093 ~ 23274655 (+)
G103130 NA non-coding upstream 78987 22049174 ~ 22049382 (+)
G102903 NA non-coding upstream 622747 21504744 ~ 21505622 (+)
G102703 NA non-coding upstream 933965 21149084 ~ 21194404 (+)
G102585 NA non-coding upstream 1123648 21004336 ~ 21004721 (+)
G102415 NA non-coding upstream 1194275 20930187 ~ 20934094 (+)
G103246 NA non-coding downstream 355541 22526375 ~ 22526736 (+)
G103270 NA non-coding downstream 521258 22692092 ~ 22692310 (+)
G103297 NA non-coding downstream 695906 22866740 ~ 22869283 (+)
G103301 NA non-coding downstream 728229 22899063 ~ 22899437 (+)
G103331 NA non-coding downstream 829533 23000367 ~ 23006640 (+)
zbbx zbbx other upstream 315159 21762447 ~ 21813210 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other upstream 1026153 21026027 ~ 21102216 (+)
prx NA other upstream 1161098 20939413 ~ 20967271 (+)
irf2bp1 irf2bp1 other upstream 1279031 20844674 ~ 20849338 (+)
pid1 pid1 other upstream 1442181 20638760 ~ 20686188 (+)
LOC113526422 p2ry6 other downstream 771875 22942709 ~ 22983599 (+)
relt relt other downstream 942250 23113084 ~ 23148872 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other downstream 992812 23163646 ~ 23259257 (+)
serp1 NA other downstream 1401717 23572551 ~ 23575713 (+)
G103830 NA other downstream 1444269 23615103 ~ 23629723 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G442601 NA non-coding CI01000311 null 803259 ~ 803571 (-)