G103327


Basic Information

Item Value
gene id G103327
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23106142 ~ 23106241 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122293
AGGAAGTCattgtgtttattgtaaatttgGATATATATTGCCTTTTTTCTGTACATAGTGCTCTCACTGTCTACAATTGTTGATATGAATCTGAtggcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122293 True 100 lncRNA 0.32 1 23106142 23106241

Neighbor

gene id symbol gene type direction distance location
LOC113526468 arhgef17,si:ch211-248g20.5,LOC107660677,LOC107658857 coding upstream 6251 22985409 ~ 23099891 (+)
fam168a fam168a,LOC108264593,LOC107594362,LOC107600264 coding upstream 172117 22883271 ~ 22934025 (+)
LOC113526346 wdr49,LOC108264614 coding upstream 1372571 21689428 ~ 21733571 (+)
pdcd10a pdcd10,LOC108410962,LOC107600227,LOC107686582,LOC103039132,LOC107662908,LOC108411198 coding upstream 1423819 21664634 ~ 21682323 (+)
golim4a golim4 coding upstream 1487806 21590626 ~ 21618336 (+)
trnak-cuu_22 NA coding downstream 56866 23163107 ~ 23163179 (+)
LOC113526446 LOC108264850 coding downstream 154381 23260622 ~ 23267820 (+)
rps3 rps3,LOC102795110 coding downstream 163852 23270093 ~ 23274655 (+)
LOC113527010 NA coding downstream 165817 23272058 ~ 23272208 (+)
LOC113527009 NA coding downstream 167067 23273308 ~ 23273458 (+)
G103331 NA non-coding upstream 99502 23000367 ~ 23006640 (+)
G103301 NA non-coding upstream 206705 22899063 ~ 22899437 (+)
G103297 NA non-coding upstream 236859 22866740 ~ 22869283 (+)
G103270 NA non-coding upstream 413832 22692092 ~ 22692310 (+)
G103246 NA non-coding upstream 579406 22526375 ~ 22526736 (+)
G103376 NA non-coding downstream 80911 23187152 ~ 23187663 (+)
G103606 NA non-coding downstream 309254 23415495 ~ 23416103 (+)
G103688 NA non-coding downstream 439876 23546117 ~ 23546390 (+)
G103828 rnpepl1 non-coding downstream 592611 23698852 ~ 23702964 (+)
G103832 NA non-coding downstream 597347 23703588 ~ 23705228 (+)
LOC113526422 p2ry6 other upstream 122543 22942709 ~ 22983599 (+)
zbbx zbbx other upstream 1292932 21762447 ~ 21813210 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other upstream 2003926 21026027 ~ 21102216 (+)
prx NA other upstream 2138871 20939413 ~ 20967271 (+)
irf2bp1 irf2bp1 other upstream 2256804 20844674 ~ 20849338 (+)
relt relt other downstream 6843 23113084 ~ 23148872 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other downstream 57405 23163646 ~ 23259257 (+)
serp1 NA other downstream 466310 23572551 ~ 23575713 (+)
G103830 NA other downstream 508862 23615103 ~ 23629723 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other downstream 633261 23739502 ~ 23763045 (+)

Expression


Co-expression Network