G103828 (rnpepl1)


Basic Information

Item Value
gene id G103828
gene name rnpepl1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23698852 ~ 23702964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122862
CTTCATGACATTGTTCTTTCTCAGTAATTTTGGAATTATCTGTAAGTCAGTTTATTAGTCTGAagatgtttacattttatagctATACCTGCAGCAAAAACTGCTTTATAAACTATTAATTATTCCATGTAGATGTTATTCTCTTATGTGCAATCCTCCTTTCTgtttcacaaaacacacagacgcAGCAGGCATACacctaaaataattttattgatgAGACAGAGAGTTCATTCTCCCTGTTCAACTTCTCAGGCCTTTACAAGGCAATTAAGAAATCATGCTAAGGCTGtggaaagtaaagaaaataacagGTGACTGGATATTGTGCGGGTCCTACTGAGGAAGCAGGTATAAATATCAGATTCTCCTTCATCAAGGCCAAAGATGATATTCACCTGATCCAAGTTTCCTACTCAGAGTGATCATTTTCCAGAGCTTTGCTCTGATAGATCACTCTGCTCAGCGCAAAAACAACCCATTTAATGTGCACAGATCCTGCTGTGGGGATTTGGTGATCTCCTCTGACTGTgtgaatatgcaaaaaaaaaaaaaaaaaaaaaaatcacaaatatagATACATCAGCAGACCGAAATGAAATGTTGACTCAGCACAAAATAGTGGAAACATGTACAAGGCCTCTTAGCACAAATGCGGCTGTCCTTGTTATGTGGAACAAGTATTCTGAGAAGCAGCACTGTTTCTAACTCAGTGTCATCAAAACTTCCTGTCAACAAAATCACCAGCATCAGGAGTTCAAGTTACGAGACATTACACAGTCACACAAGTTGGCAAAAATCAAGTTATTAGACTCAAGGTTATGGTACAGTGATTTGTGCATGTGACATACGTGAACAGAGCTAATGCACAAAAGCtctggatacacacacacacacacacacacaccctttcccCAGTGTAAATAATATCATCTTATAATAGATATAGATAAACACTCTATGAAACACACCAGTTTGCATGAATGGACCTACATGAAAACCGATGTCTGCTTGTATAATGCAAAATATGGTTACAGTATCAGTATTTGGTGACCTGACCATTGCAGCTAACATTAAGTACATCTGAACAGGCATGTTCATGATTCTGTCTCCATAGAGACACAGTATTCCCGCTCTCCAGACACGGCAAAGCCCCAGACGCCTGCAATAGCAGAAATCTTGTTCTCCACCGCAGCCAGCATGGCGCAAAATCGAGAGTTCTCGTTGGCCAGAAGTCTGGACGGCTCGTCgaattccaccacctgggtcgAAA
>TU122863
TGGTGTAGCGGACGGTGACCCGGAAGGGCCGGTGTGGCCGGATGGCCGCGGCGGGGAGCGCGATGCGGAGCGAGGACCCGTAATCGGTGAACGGCTCGAGGTTGTAGGACAGCGAGAAGATGACATCTGGAGATCCGGATGTGCCTGGGATCTTGCAGTCCACAGAGTGGATCAGTAAAGACGGGTGCACGTCCAGCACCAGCGACTGAACCCCGGGCTGCAGCGTGGCCAGCTCCAGCACCTGCCAGCCTGTGATCCTCTTCAGCCCGAAGTTCACCCGCAGGTCCAGGTGGAAGTGGCGCAGCGAGAAGCTGTGGAAGTTGGACGCCGAGGCGACGTCAACCAGCCGGCAGCGACCCAGTGATCGAGCCCCGTCACGCGCTTTACCGGGCACCGGCAGCGCCTTccggcagcagcagcacagcgCCGCGTTCAGCTCGGCCATGGCAACGCGCAGCACCGGATCGattaaaaaagacagagagagagagagagagagtacaagAAGAAAAGTTCGCACAAACAAAACAGGGTGAAGGTGCAAACCCGCGACGCACTTCCTCTACAGCTGTGAcatggctgattttttttaaacaaaggcTGCAAAGTTTTCAACTGGATTCAGAATCATTCCAGCAAAGAGAAGAGCAGTGAGCTTTCTGCCAAAGCAAAACATCTAGGTAAAATCCATCAGGGCCGCGGAGAGCAGACagtccatcactccatcctccatgaaaaacagacagattgTAGCTTTCAGTAAAGCGGCTGGAGCTGAAACTAAGGAAAAAGACACCACTGCAAAGCTGAAATGAACCAATCTATGTTGAGTGACTCCCTttacaaaacaggaagtgaaaacaaggaggaggaggaaatcGCACGGACACCAGAAAGTTTTGGAAGAGCCAGAGGGCGCTGTGGAGCCGGAGAGTCGGTTCGAAATCTTGTTCTCCACCGCAGCCAGCATGGCGCAAAATCGAGAGTTCTCGTTGGCCAGAAGTCTGGACGGCTCGTCgaattccaccacctgggtcgAAA

Function

symbol description
rnpepl1 Predicted to enable metalloaminopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Orthologous to human RNPEPL1 (arginyl aminopeptidase like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122862 True 1273 lncRNA 0.40 2 23701590 23702964
TU122863 False 1041 lncRNA 0.56 2 23698852 23702964

Neighbor

gene id symbol gene type direction distance location
pcyt1ab LOC108264716,LOC108440592,LOC107717621,LOC107670596,LOC107758059,LOC107575479 coding upstream 107071 23582140 ~ 23591781 (+)
LOC113526461 NA coding upstream 152981 23541234 ~ 23545871 (+)
ompa omp,LOC107735103 coding upstream 176596 23521335 ~ 23522256 (+)
gdpd4a gdpd4a,LOC108264809,LOC108431176,LOC107660699 coding upstream 246292 23429156 ~ 23452560 (+)
pak1 pak1,LOC100698864 coding upstream 284117 23346830 ~ 23414735 (+)
wt1b wt1,LOC108264570 coding downstream 153474 23856438 ~ 23876045 (+)
pex16 pex16,LOC107758067 coding downstream 620756 24323720 ~ 24335065 (+)
si:ch211-71n6.4 LOC108264393 coding downstream 636671 24339635 ~ 24349296 (+)
cep126 NA coding downstream 665115 24368079 ~ 24384446 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding downstream 689334 24392298 ~ 24427128 (+)
G103688 NA non-coding upstream 152462 23546117 ~ 23546390 (+)
G103606 NA non-coding upstream 282749 23415495 ~ 23416103 (+)
G103376 NA non-coding upstream 511189 23187152 ~ 23187663 (+)
G103327 NA non-coding upstream 592611 23106142 ~ 23106241 (+)
G103331 NA non-coding upstream 692212 23000367 ~ 23006640 (+)
G103832 NA non-coding downstream 624 23703588 ~ 23705228 (+)
G103889 NA non-coding downstream 26914 23729878 ~ 23738753 (+)
G103896 NA non-coding downstream 46099 23749063 ~ 23754260 (+)
G104257 NA non-coding downstream 777401 24480365 ~ 24484096 (+)
G104284 NA non-coding downstream 861668 24564632 ~ 24571887 (+)
G103830 NA other upstream 69129 23615103 ~ 23629723 (+)
serp1 NA other upstream 123139 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 439595 23163646 ~ 23259257 (+)
relt relt other upstream 549980 23113084 ~ 23148872 (+)
LOC113526422 p2ry6 other upstream 715253 22942709 ~ 22983599 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other downstream 36538 23739502 ~ 23763045 (+)
LOC113526839 NA other downstream 1530661 25233625 ~ 25240213 (+)
G104781 NA other downstream 1591935 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 3128014 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 3508425 27211389 ~ 27214570 (+)

Expression


Co-expression Network