G103896


Basic Information

Item Value
gene id G103896
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23749063 ~ 23754260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU122944
acgataatgtattataacaaacacattaatataaacctgtgatttgagttacaattggcagtactgtcagagctgctgttatagaaaactaatcaaagctttctgaccaatcagatttgagaattcaacaacactgtggtgtCATGTCAGTTAATGTCATACTAATGCTTCTGGTTAAATCCTTTAAGGGAAATTAATTTGAGTGCCCTGACTTATCAAATTACAGACACTGCAGCACCTTTAACACTGAATTGGAAATTATATGATCAAAGTTAGTATTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122944 True 283 lncRNA 0.33 2 23749063 23754260

Neighbor

gene id symbol gene type direction distance location
pcyt1ab LOC108264716,LOC108440592,LOC107717621,LOC107670596,LOC107758059,LOC107575479 coding upstream 157282 23582140 ~ 23591781 (+)
LOC113526461 NA coding upstream 203192 23541234 ~ 23545871 (+)
ompa omp,LOC107735103 coding upstream 226807 23521335 ~ 23522256 (+)
gdpd4a gdpd4a,LOC108264809,LOC108431176,LOC107660699 coding upstream 296503 23429156 ~ 23452560 (+)
pak1 pak1,LOC100698864 coding upstream 334328 23346830 ~ 23414735 (+)
wt1b wt1,LOC108264570 coding downstream 102178 23856438 ~ 23876045 (+)
pex16 pex16,LOC107758067 coding downstream 569460 24323720 ~ 24335065 (+)
si:ch211-71n6.4 LOC108264393 coding downstream 585375 24339635 ~ 24349296 (+)
cep126 NA coding downstream 613819 24368079 ~ 24384446 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding downstream 638038 24392298 ~ 24427128 (+)
G103889 NA non-coding upstream 10310 23729878 ~ 23738753 (+)
G103832 NA non-coding upstream 43835 23703588 ~ 23705228 (+)
G103828 rnpepl1 non-coding upstream 46099 23698852 ~ 23702964 (+)
G103688 NA non-coding upstream 202673 23546117 ~ 23546390 (+)
G103606 NA non-coding upstream 332960 23415495 ~ 23416103 (+)
G104257 NA non-coding downstream 726105 24480365 ~ 24484096 (+)
G104284 NA non-coding downstream 810372 24564632 ~ 24571887 (+)
G104325 NA non-coding downstream 821232 24575492 ~ 24634405 (+)
G104429 NA non-coding downstream 1008382 24762642 ~ 24764112 (+)
G104509 NA non-coding downstream 1072506 24826766 ~ 24827147 (+)
G103830 NA other upstream 119340 23615103 ~ 23629723 (+)
serp1 NA other upstream 173350 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 489806 23163646 ~ 23259257 (+)
relt relt other upstream 600191 23113084 ~ 23148872 (+)
LOC113526422 p2ry6 other upstream 765464 22942709 ~ 22983599 (+)
LOC113526839 NA other downstream 1479365 25233625 ~ 25240213 (+)
G104781 NA other downstream 1540639 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 3076718 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 3457129 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 3771863 27526123 ~ 27545526 (+)

Expression


Co-expression Network