rnpepl1 (rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502)


Basic Information

Item Value
gene id rnpepl1
gene name rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23648684 ~ 23699707 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123026
GGAGTCACTCAACATAGATTGGTTCATTTCAGCTTTGCAGTGGTGTCTTTTTCCTTAGTTTCAGCTCCAGCCGCTTTACTGAAAGCTAcaatctgtctgtttttcatggaggatggagtgatggactGTCTGCTCTCCGCGGCCCTGATGGATTTTACCTAGATGTTTTGCTTTGGCAGAAAGCTCACTGCTCTTCTCTTTGCTGGAATGATTCTGAATCCAGTTGAAAACTTTGCAgcctttgtttaaaaaaaatcagccatgTCACAGCTGTAGAGGAAGTGCGTCGCGGGTTTGCACCTTCACCCTGTTTTGTTTGTGCGAACTTTTCTTcttgtactctctctctctctctctctctctctctgtgtct
>XM_026913558.2
acttcctgttttgtaaAGGGAGTCACTCAACATAGATTGGTTCATTTCAGCTTTGCAGTGGTGTCTTTTTCCTTAGTTTCAGCTCCAGCCGCTTTACTGAAAGCTAcaatctgtctgtttttcatggaggatggagtgatggactGTCTGCTCTCCGCGGCCCTGATGGATTTTACCTAGATGTTTTGCTTTGGCAGAAAGCTCACTGCTCTTCTCTTTGCTGGAATGATTCTGAATCCAGTTGAAAACTTTGCAgcctttgtttaaaaaaaatcagccatgTCACAGCTGTAGAGGAAGTGCGTCGCGGGTTTGCACCTTCACCCTGTTTTGTTTGTGCGAACTTTTCTTcttgtactctctctctctctctctctgtcttttttaatCGATCCGGTGCTGCGCGTTGCCATGGCCGAGCTGAACGCGGcgctgtgctgctgctgccggAAGGCGCTGCCGGTGCCCGGTAAAGCGCGTGACGGGGCTCGATCACTGGGTCGCTGCCGGCTGGTTGACGTCGCCTCGGCGTCCAACTTCCACAGCTTCTCGCTGCGCCACTTCCACCTGGACCTGCGGGTGAACTTCGGGCTGAAGAGGATCACAGGCTGGCAGGTGCTGGAGCTGGCCACGCTGCAGCCCGGGGTTCAGTCGCTGGTGCTGGACGTGCACCCGTCTTTACTGATCCACTCTGTGGACTGCAAGATCCCAGGCACATCCGGATCTCCAGATGTCATCTTCTCGCTGTCCTACAACCTCGAGCCGTTCACCGATTACGGGTCCTCGCTCCGCATCGCGCTCCCCGCCGCGGCCATCCGGCCACACCGGCCCTTCCGGGTCACCGTCCGCTACACCACCACAGATGGACCCGCGaTCTGGTGGGTGGACACAGAGCTAACGTGTGGTCAGACGCAGCCATTGGTCTTCACTCAGGGTCACTCTGTGTGCAATCGTTCCTTTTTCCCCTGCTTTGACACTCCAGCTGTCAAAAGCACCTACTCTGCTACCATCAGGGTTCCAGATGGAGTGACGGTGCTAATGAGTGCCTCTAGGAGTGTGTACTCTAAGCAGGACCGGCTGTTCCAGTTCTCTATGGAGTACCCTGTTCCTGCCTACTTGGTGGCCCTGGTGGCTGGAGATCTACAGCACACTGACATCGGGCCCAGGAGCCGTGTGTGGGCTGAGCCCTGTCTCCTGACCTCTGCTGTTAGTAAGCTGGGAGGCAGCGTGGAGCGCTGCCTCAATGTGGCCGAGCAGCTCTTTGGCTCTTATGTGTGGGGCAGGTACGACATTGTATTCCTCCCTCCTTCATTCCCTATCGTGGCGATGGAGAACCCGTGTCTCACCTTCATTATCTCCTCCATTCTGGAGAGTCAGGAGTTCCTGCTGATCGATGTCATTCATGAGATCGCTCACGGCTGGTTCGGAAACGCCGTCACCAACGCCACCTGGGAGGAGATGTGGCTCAGTGAGGGACTAGCCACGTACGCACAGAGACGCATCACTACAGAGGTTTatgGTGAAGCCCTAACCTGCCTGGAGACGGTCTTTCGTTTGGACGCGCTGCACAGACAAATGCGTCTTCTTGGAGACAACAATCCAGTGAGCAAGCTGCAAGCCAAGTTTGAGCCAGGGGTTAACCCCAGCAGTCTGATGAATCTGTTCACCTATGAGAAAGGCTTTTGCTTTGTCTCGTACCTCTCACAGCTCTGCGGTGACATCAAAAGATTTGACACTTTCCTCAAGGCCTACATCGAGCAGTTCAGGTTCAGCAGTGTGGTTGCTCAGGACCTGCTCGATTTCTTCCTGGGCTTCTTTCCTGAGCTGAAGGAGAGCTGTGTAGCGCAGCGAGAAgGGCTGGAGTTTGAGCGCTGGCTGAATGAGTGCGGCCCTCCTCTGTGTGAGCCGGATCTTTCCGCTGGCGTCATGTTGACTGGGCCTGTCCAGCACCTCTGTGAACTCTGGGGCATGGAGTCGCCGGACCGCCAAGCCATTGCGACCTTTGACCTCTCCACGTGGAGCACCTTCCAGACCGTTCTCTTCCTGGACCGACTGCTGGACCGCTCACCTCTGCCACAAGAAGTGATGAGTCTGCTATCGAGCTGCTACTCGGTTCTGCTGGATGGCATGAACGCCGAGGTGCAGATTCGCTGGCTGCAGGTCGTAGTGAGAAACAGCTTTTATCCTGACCTGCATCGTGTTCGCAGTTTCCTGCACAAACATACCTCGCGCATGTACACAGTGCCTCTGTATGAGGACCTGTGTGGAGgagttctgaagtgtttcgctGTCGAGGTGTTTTACCAAACGCAGGACCGCTTACACCCCAACCTGCGCAAGGCGCTGCAGCAGATTCTATTCCAAACCAGTGCGGCGAGCACCTCTAGCACCCCGGCCCTGGTCGGCCCACCCCAGTCCACTCCATCGCCACCCCCAGACCCACCCACTAATGGGACCATGGCCCTGCTAGATGTCAACGTGTCCGCGTGACACTTTAGAGAGCCGCAGGGGACACAGAGTAAGTGaactgagaaaagaatggaGAAGTTCGTCGCAGGAGGCCTGcccatgtgcgtgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgcgtgcgtgtgcacTCTCCAACACTGGGATTTTTACATGCACCTTCAAAATTCATGTTCAAGCTGCTCAGGTTTTGTGGAATGAAGTTGGGGATGGACACCATGGACTGTGTTTAAagatggttttatatatatatat

Function

symbol description
rnpepl1 Predicted to enable metalloaminopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Orthologous to human RNPEPL1 (arginyl aminopeptidase like 1).

NR:

description
aminopeptidase RNPEPL1 isoform X1

GO: NA

KEGG:

id description
K09605 RNPEPL1; arginyl aminopeptidase-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU123026 False 373 lncRNA 0.45 2 23648684 23699689
XM_026913558.2 True 2748 mRNA 0.55 11 23684118 23699707

Neighbor

gene id symbol gene type direction distance location
ap2m1b ap2m1b,ap2m1,LOC108264350,LOC108440593 coding downstream 16317 23615371 ~ 23632367 (-)
mtif2 mtif2 coding downstream 66604 23578039 ~ 23582080 (-)
eif2a eif2a,LOC107660686,LOC107665043,LOC107735855 coding downstream 77662 23559123 ~ 23571022 (-)
dcun1d5 dcun1d5,LOC107712802 coding downstream 91150 23547392 ~ 23557534 (-)
capn5a capn5,capn5a,LOC108264643,LOC107660684,LOC108440168,LOC107600851 coding downstream 113004 23513393 ~ 23535680 (-)
abcc5 abcc5,LOC107670605,LOC107671530 coding upstream 2077 23701784 ~ 23731415 (-)
depdc7a depdc7,LOC107576633,LOC107758055 coding upstream 65830 23765537 ~ 23786329 (-)
qser1 qser1 coding upstream 94483 23794190 ~ 23815913 (-)
prrg4 prrg4 coding upstream 116976 23816683 ~ 23826844 (-)
eif3m eif3m coding upstream 135465 23835172 ~ 23843472 (-)
G103820 NA non-coding downstream 73005 23572589 ~ 23575679 (-)
G103817 NA non-coding downstream 135356 23512157 ~ 23513328 (-)
G103727 NA non-coding downstream 318583 23329676 ~ 23330101 (-)
G103719 NA non-coding downstream 325272 23321663 ~ 23323412 (-)
G103702 rps3,LOC107600794 non-coding downstream 373402 23270144 ~ 23275282 (-)
G104291 six9,LOC108263903,LOC108433455,LOC107554476 non-coding upstream 715193 24414900 ~ 24464578 (-)
G104320 NA non-coding upstream 834030 24533737 ~ 24534419 (-)
G104694 hnrnpul1 non-coding upstream 1414270 25113977 ~ 25151156 (-)
LOC117597583 NA non-coding upstream 1492350 25192057 ~ 25214790 (-)
G104747 NA non-coding upstream 1539403 25239110 ~ 25241770 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other downstream 38236 23590945 ~ 23610448 (-)
si LOC108264758,LOC108431149 other downstream 1341915 22231448 ~ 22306769 (-)
sertad3 sertad3 other downstream 2635584 20995341 ~ 21013100 (-)
G102566 NA other downstream 2681774 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 3232110 20395866 ~ 20416574 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 33163 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 780595 24480302 ~ 24574675 (-)
G104473 map3k10 other upstream 923809 24623516 ~ 24711368 (-)
ttc9b ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 other upstream 931932 24631639 ~ 24661978 (-)
clasrp clasrp,LOC107758246,LOC107662138 other upstream 1051946 24751653 ~ 24764161 (-)

Expression


Co-expression Network