G104257


Basic Information

Item Value
gene id G104257
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24480365 ~ 24484096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123375
TATTAAATGTACACTCATCAATATGAGGTTCCCAGGAGAAACTGAAAGATTAATCAGTTATCGGATTTTACGAGGCATAAAGCAAACTGCGAAGGGCAGCATacaagaagaaaattaaaaattaaaacaaatcattaaaaaaaatgaggaaattgAGCATTGTACAAAAGAGCAGAAATCAAACATCTCATGTATGacttaaaaaaatcaaccaaaattcctttttttttcactgaaaaatGGCTGATGTGtccaaagagaaagagatagagaagaaaaaaaaatccaaaataaataatccaAATTTTTACACATACGACACAGCAAGTTTTACAGCTGGACTATAGTTTAATGATTTATTCATGTGCACAGATTCAGCTAGCTGTAGATCACTTGTACTTAgcttaaaagttaaaataacaCGAAAACATCAAAAACACCTCCACCCTTGAACAAACTAAAGAATTAAGACAGCTGATGGTGTGTATAATCAGCACGCAGAGCTTCGCATGAGgccgtgagtgtgtgttgatgtagcacacacacacgtgtaagCTGGTGAGGAGAGGATGACCTGATGTTGGCGTTTAGTGAGGATGAAGAAGGCTGACGAGGATAAAGAGTAGTAATGGGGGCATTTTTACACAAGTAACAGGCTCTttcatatttctatattttgtcTATGATGAGAAATTTAGAAATGGTGCAGTttagttgcatttaaaaaagaacaccAAAATACAGTTGCAACTTTAAATTGCCTAGGATTTAACGGaaacctccaccctgaaacgcattaaatatgtttatattgtttagTGATGTGTTCAGTGATTCTGCTGTTAATCTgatggttggtgctgtattttccttattcctgtgagaagttagtgtgccgtgctgatgtcacagggagacattgttattgctagtgCACTTTAAAATGGTGTTTAATAAGAGAAAACAAATTCTCAGCACATAAGGGAGAACGTTcatgtttcactgttagctcctaaaaacaaaagagcaagagcttcttttatTAGTCACCTTTTCCCAGAGATGTTCGAGATCATACTAATGGAATATCCAATGCAGAAGTAGAGGAGATGTTGGTGCAaacgttggactcaaagttccagaatgcaatgcagctatatgacacaGTCGTGCTGAGCTACAGCAGAGACTTGCCTCGGCTAGTTggtgatctatgagatgacgaGGGCGATCTTTCTGAGCTGGATAGACTAAAGgattaaagtgctgctgcatcgaTCTTTTCAGGTAGGGATGAAGatagggctaaatcccactgcaccaatCAGCAGGCagttgaacagcattgtgggtaatgtaggaaaccatgaaaacagactgaaaaaggCAACTCcgaatttcattaaaaaataaatcttagatGCTAGGTTAGTTATaaagttgttcagggtggatttttccttgaACTGTTGTATGATAATTTTCCAGTCTAAACAGCTctctccaggtgtgtgtgtgtgtgtgtgtcggtgtgtttATCCATATTAGTTGGTTATAGAATATAAAACATAACGCCACCCTCTGGTCGAcgcataaataaatagaataaatagtTCAGGCCGTCGAGGGCGAGTTGTGGCTCctgagagatgagatgatgtTTTCCAGTTAGACCAGATTAAAGGGACAGTCGGGGTTGCGTCGTTTCACTATGCCATATTAAAGCTCATATATACAGAGTACCTACCGACAGCTAATGAGCAACTGGTCTGGATCAAACCTACTCGCTAATTTAGTTACTGTAACTGTATAAACTGCTCTAATACTAACAAAAAAGCCTCATGAAGGGTGACTAATCTCTTTACAGTGCAGGGGATGAGGAAACCAGCATAAGTACATAACCCATACATGGATCTGTTTGTTCTTGGTTTTAAAAACAGCCAACAGTCGTGTCACCTGATACACCTAAACTGAGAggtaaatagaaaaatatattatgtgTGGAAGGCGCCGTGCCTCACAAGCGCAGGCGCTGTTGTGTCTCAGTTGCATACAGACGTACAGTGTCTCGATTCGACGAAGAAGCCAGAGTTTACACACAGTGCAATGCCAAAGCATTGGAAGGGGAAAATTGAGATGAGCATCACAGTTCTAGGAGCAGTCGCTCTAATTGGTCCTGTGTtttacagtaactctgtttaACAGTAGCGGCGGTGATGCTTTAAGAAGAGATCTGTCTCCGTGTTTGATTCCTGCAGAACACCACGTGGATGACTGGAGACTGAGATGGGatgactgattatttttctacagtCACGTCTAGTCATTGAGAAGCAGTACTAATGGGGAAGATATTGTATGAAGAACAACAGAAGTACTGACTCTGTCCATACTCACTAACCACGGTGCACAGAAGGATGTCACCTGGGTAACGTAGAAACCAGCACTGTGAGAACAGGACCTGCAGTACATGATGTCATGATGTCTTAGCTTAGATATGACTGTCATTAAAGGAATGGTTCGGCAAAAATGTAGCCGATCAGCCGAAAGatatttagttttgcactggactTACACTGCAACCAAGTAATGCAAGTCTTTTTCACCcaagactctttccataaatatgCCTCAAACTGTATACTGGGAGTTTGAGAGAGCACAGTTGGTCATGCTGTCCGGGtgagagggatggcatactctctctccgtGACACTAGACGATTaagagcatctgtgagctcatgtttgcggaagagggcagatagcgctttcctcctaatgctcagctgccctgtgacagcTGGCTTCATGTCTTCACCTTCTCTTTTTGGTAGCTGTGGAGTGATggggagagctagctagtgggtgggaattggcaaaatgatcaaattgagagattaaaaaaaaacaaaacaaacaaaaaaaaaccctgcatcAAGTTCTGCAGTAAATTTAGACagaatttatgtaaaatatagaACACGATatacgtgctgttataggaagataatcaacgaCCAGGTGGCATGATGATTCTATCACTTCcccaatcactgattatttttcctattttcctaaGGTGGAGTGTCCACCTTAGGTCTGTCAGTAAGTTGTTATAAGATAAaccataatgtattagaatgagcacattaatataaaactgtcatGTGCCTttcagccagcactactgtcagagctactgttatagaaaattaatcaacaccatctgaccaattgAGAAATCAAGGTCAATCAAGGTATAAGGTCAGTATCACTACATAGTGTCACTTAcagaaatctgtaaaaataaatcaaacaatgAGGGCAGCTCACTGGAAAACCAGAATCACTGTTTTCCAGTTCAGCCACTTTGGTCTTAACTGTGTAAGCACTGACTATGTCTTCTATTTGAGAGAAAATCCTTTATCTGAACATTTACACGTGGCCTAATGACATCTGCAATGAGTATATGAAGAAGGGCATGTGtttatggaaaagattttgggtgaaatATGGAAGTGACATCCATCACTTGATTTTTACATtagtgaaaaatacaaaagcaCAACTTGTCTTGGCTGATTTACTTTCATTGAACCATTCGTTTAAGATCATCTACAATGTTTAAGCTGAGGGTCACATACTGTCTGGTTCAG
>TU123377
TATTAAATGTACACTCATCAATATGAGGTTCCCAGGAGAAACTGAAAGATTAATCAGTTATCGGATTTTACGAGGCATAAAGCAAACTGCGAAGGGCAGCATacaagaagaaaattaaaaattaaaacaaatcattaaaaaaaatgaggaaattgAGCATTGTACAAAAGAGCAGAAATCAAACATCTCATGTATGacttaaaaaaatcaaccaaaattcctttttttttcactgaaaaatGGCTGATGTGtccaaagagaaagagatagagaagaaaaaaaaatccaaaataaataatccaAATTTTTACACATACGACACAGCAAGTTTTACAGCTGGACTATAGTTTAATGATTTATTCATGTGCACAGATTCAGCTAGCTGTAGATCACTTGTACTTAgcttaaaagttaaaataacaCGAAAACATCAAAAACACCTCCACCCTTGAACAAACTAAAGAATTAAGACAGCTGATGGTGTGTATAATCAGCACGCAGAGCTTCGCATGAGgccgtgagtgtgtgttgatgtagcacacacacacgtgtaagCTGGTGAGGAGAGGATGACCTGATGTTGGCGTTTAGTGAGGATGAAGAAGGCTGACGAGGATAAAGAGTAGTAATGGGGGCATTTTTACACAAGTAACAGGCTCTttcatatttctatattttgtcTATGATGAGAAATTTAGAAATGGTGCAGTttagttgcatttaaaaaagaacaccAAAATACAGTTGCAACTTTAAATTGCCTAGGATTTAACGGaaacctccaccctgaaacgcattaaatatgtttatattgtttagTGATGTGTTCAGTGATTCTGCTGTTAATCTgatggttggtgctgtattttccttattcctgtgagaagttagtgtgccgtgctgatgtcacagggagacattgttattgctagtgCACTTTAAAATGGTGTTTAATAAGAGAAAACAAATTCTCAGCACATAAGGGAGAACGTTcatgtttcactgttagctcctaaaaacaaaagagcaagagcttcttttatTAGTCACCTTTTCCCAGAGATGTTCGAGATCATACTAATGGAATATCCAATGCAGAAGTAGAGGAGATGTTGGTGCAaacgttggactcaaagttccagaatgcaatgcagctatatgacacaGTCGTGCTGAGCTACAGCAGAGACTTGCCTCGGCTAGTTggtgatctatgagatgacgaGGGCGATCTTTCTGAGCTGGATAGACTAAAGgattaaagtgctgctgcatcgaTCTTTTCAGGTAGGGATGAAGatagggctaaatcccactgcaccaatCAGCAGGCagttgaacagcattgtgggtaatgtaggaaaccatgaaaacagactgaaaaaggCAACTCcgaatttcattaaaaaataaatcttagatGCTAGGTTAGTTATaaagttgttcagggtggatttttccttgaACTGTTGTATGATAATTTTCCAGTCTAAACAGCTctctccaggtgtgtgtgtgtgtgtgtgtcggtgtgtttATCCATATTAGTTGGTTATAGAATATAAAACATAACGCCACCCTCTGGTCGAcgcataaataaatagaataaatagtTCAGGCCGTCGAGGGCGAGTTGTGGCTCctgagagatgagatgatgtTTTCCAGTTAGACCAGATTAAAGGGACAGTCGGGGTTGCGTCGTTTCACTATGCCATATTAAAGCTCATATATACAGAGTACCTACCGACAGCTAATGAGCAACTGGTCTGGATCAAACCTACTCGCTAATTTAGTTACTGTAACTGTATAAACTGCTCTAATACTAACAAAAAAGCCTCATGAAGGGTGACTAATCTCTTTACAGTGCAGGGGATGAGGAAACCAGCATAAGTACATAACCCATACATGGATCTGTTTGTTCTTGGTTTTAAAAACAGCCAACAGTCGTGTCACCTGATACACCTAAACTGAGAggtaaatagaaaaatatattatgtgTGGAAGGCGCCGTGCCTCACAAGCGCAGGCGCTGTTGTGTCTCAGTTGCATACAGACGTACAGTGTCTCGATTCGACGAAGAAGCCAGAGTTTACACACAGTGCAATGCCAAAGCATTGGAAGGGGAAAATTGAGATGAGCATCACAGTTCTAGGAGCAGTCGCTCTAATTGGTCCTGTGTtttacagtaactctgtttaACAGTAGCGGCGGTGATGCTTTAAGAAGAGATCTGTCTCCGTGTTTGATTCCTGCAGAACACCACGTGGATGACTGGAGACTGAGATGGGatgactgattatttttctacagtCACGTCTAGTCATTGAGAAGCAGTACTAATGGGGAAGATATTGTATGAAGAACAACAGAAGTACTGACTCTGTCCATACTCACTAACCACGGTGCACAGAAGGATGTCACCTGGGTAACGTAGAAACCAGCACTGTGAGAACAGGACCTGCAGTACATGATGTCATGATGTCTTAGCTTAGATATGACTGTCATTAAAGGAATGGTTCGGCAAAAATGTAGCCGATCAGCCGAAAGatatttagttttgcactggactTACACTGCAACCAAGTAATGCAAGTCTTTTTCACCcaagactctttccataaatatgCCTCAAACTGTATACTGGGAGTTTGAGAGAGCACAGTTGGTCATGCTGTCCGGGtgagagggatggcatactctctctccgtGACACTAGACGATTaagagcatctgtgagctcatgtttgcggaagagggcagatagcgctttcctcctaatgctcagctgccctgtgacagcTGGCTTCATGTCTTCACCTTCTCTTTTTGGTAGCTGTGGAGTGATggggagagctagctagtgggtgggaattggcaaaatgatcaaattgagagattaaaaaaaaacaaaacaaacaaaaaaaaaccctgcatcAAGTTCTGCAGTAAATTTAGACagaatttatgtaaaatatagaACACGATatacgtgctgttataggaagataatcaacgaCCAGGTGGCATGATGATTCTATCACTTCcccaatcactgattatttttcctattttcctaaGGTGGAGTGTCCACCTTAGGTCTGTCAGTAAGTTGTTATAAGATAAaccataatgtattagaatgagcacattaatataaaactgtcatGTGCCTttcagccagcactactgtcagagctactgttatagaaaattaatcaacaccatctgaccaattgAGAAATCAAGGTCAATCAAGGTATAAGGTCAGTATCACTACATAGTGTCACTTAcagaaatctgtaaaaataaatcaaacaatgAGGGCAGCTCACTGGAAAACCAGAATCACTGTTTTCCAGTTCAGCCACTTTGGTCTTAACTGTGTAAGCACTGACTATGTCTTCTATTTGAGAGAAAATCCTTTATCTGAACATTTACACGTGGCCTAATGACATCTGCAATGAGTATATGAAGAAGGGCATGTGtttatggaaaagattttgggtgaaatATGGAAGTGACATCCATCACTTGATTTTTACATtagtgaaaaatacaaaagcaCAACTTGTCTTGGCTGATTTACTTTCATTGAACCATTCGTTTAAGATCATCTACAATGTTTAAGCTGAGGGTCACATACTGTCTGGTTCAGGTAGCACCCCGATGTGtttataacattaaattacAATATCTTGATCTTCTTGCATTCCATGTacctgtaaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123375 False 3658 lncRNA 0.40 1 24480365 24484022
TU123377 True 3732 lncRNA 0.39 1 24480365 24484096

Neighbor

gene id symbol gene type direction distance location
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 12889 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 18662 24448341 ~ 24461703 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 53237 24392298 ~ 24427128 (+)
cep126 NA coding upstream 95919 24368079 ~ 24384446 (+)
si:ch211-71n6.4 LOC108264393 coding upstream 131069 24339635 ~ 24349296 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding downstream 98108 24582204 ~ 24627029 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding downstream 507686 24991782 ~ 25011741 (+)
exosc5 exosc5 coding downstream 551417 25035513 ~ 25040089 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 652918 25137014 ~ 25139561 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 656056 25140152 ~ 25155099 (+)
G103896 NA non-coding upstream 726105 23749063 ~ 23754260 (+)
G103889 NA non-coding upstream 741612 23729878 ~ 23738753 (+)
G103832 NA non-coding upstream 775137 23703588 ~ 23705228 (+)
G103828 rnpepl1 non-coding upstream 777401 23698852 ~ 23702964 (+)
G103688 NA non-coding upstream 933975 23546117 ~ 23546390 (+)
G104284 NA non-coding downstream 80536 24564632 ~ 24571887 (+)
G104325 NA non-coding downstream 91396 24575492 ~ 24634405 (+)
G104429 NA non-coding downstream 278546 24762642 ~ 24764112 (+)
G104509 NA non-coding downstream 342670 24826766 ~ 24827147 (+)
G104523 NA non-coding downstream 451480 24935576 ~ 24935879 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 717320 23739502 ~ 23763045 (+)
G103830 NA other upstream 850642 23615103 ~ 23629723 (+)
serp1 NA other upstream 904652 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1221108 23163646 ~ 23259257 (+)
relt relt other upstream 1331493 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 749529 25233625 ~ 25240213 (+)
G104781 NA other downstream 810803 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 2346882 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2727293 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 3042027 27526123 ~ 27545526 (+)

Expression


Co-expression Network