G104429


Basic Information

Item Value
gene id G104429
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24762642 ~ 24764112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123569
AATTTTCTCGTAGTATTCCCGCCGTCGTTCCCCACGGCGCTTGTAGTCCACCATCATACCGCGCAACTTGCGCTCATGTTTGCGGGCCTCCTGCCACATGACAGCTCCGCTGGGGGTCGACGCGCGGCGGGGCACGGCTGCTGCTGttttttcttttatttatagaaaaaaaattgagtatTCCCCCCAAGTGTGCATACAGGACAGGCGCTGGAGCTAAAAGTTTTAACACCGCTTCGCCTGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107714737

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU123569 True 244 lncRNA 0.54 2 24762642 24764112

Neighbor

gene id symbol gene type direction distance location
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 135613 24582204 ~ 24627029 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 295166 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 300939 24448341 ~ 24461703 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 335514 24392298 ~ 24427128 (+)
cep126 NA coding upstream 378196 24368079 ~ 24384446 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding downstream 227670 24991782 ~ 25011741 (+)
exosc5 exosc5 coding downstream 271401 25035513 ~ 25040089 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 372902 25137014 ~ 25139561 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 376040 25140152 ~ 25155099 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 486230 25250342 ~ 25266857 (+)
G104325 NA non-coding upstream 128237 24575492 ~ 24634405 (+)
G104284 NA non-coding upstream 190755 24564632 ~ 24571887 (+)
G104257 NA non-coding upstream 278546 24480365 ~ 24484096 (+)
G103896 NA non-coding upstream 1008382 23749063 ~ 23754260 (+)
G103889 NA non-coding upstream 1023889 23729878 ~ 23738753 (+)
G104509 NA non-coding downstream 62654 24826766 ~ 24827147 (+)
G104523 NA non-coding downstream 171464 24935576 ~ 24935879 (+)
G104520 NA non-coding downstream 247804 25011916 ~ 25012779 (+)
G104522 NA non-coding downstream 249000 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding downstream 293763 25057875 ~ 25061300 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 999597 23739502 ~ 23763045 (+)
G103830 NA other upstream 1132919 23615103 ~ 23629723 (+)
serp1 NA other upstream 1186929 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1503385 23163646 ~ 23259257 (+)
relt relt other upstream 1613770 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 469513 25233625 ~ 25240213 (+)
G104781 NA other downstream 530787 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 2066866 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2447277 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2762011 27526123 ~ 27545526 (+)

Expression


Co-expression Network