G104522


Basic Information

Item Value
gene id G104522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25013112 ~ 25108966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123680
CGTTTACTGACATAAACTGCAAAAATAATATCGAGaggaaatatcttgaatatatgAACCAGAATCATGAAGCATCTGATTTAACTCCTTTCCAGAAGAAAATaattgaaagaagaaaaatccgCCAACAGAACAAGACAAATTTATGCTTGAAATTAGTACAGATCATAATCACGTGAGAAATATTCAATAAGTTCACCTATGTTCAAGATGTTTTCACTGGCTAAGATATCTTTTTCGTTGTAAAAGTAGAGCTCTGTACTGCAATGAAAAAATAACATCcaagcaagtgaaaatatattgaatatagtcaaattccCTATTATgtgattacaataaaccaagtgtaagattattaaatctattacTAGACATTTTTTACTAACATCAAGCTTAAAATACTGTAGTCTTTTTCagttggcagataattttattcattttaagcatttatttctagaaagaagcaaaattgtctgccaatagaataagaaaatttgaaGGTTGAAATTAGTCCAAATGTCAAGAAGTAAGTGTGAAAGCTTATTTATGAGATTTTTATGAGATATTATCTCTTTACCCGTCTTGTGTTAAGTGTTACAATCTAATTAACGTGCACATTTCCAGAAAGAGTAGTTATTCGAGACAGGAAGCAGGTAGCCCCTACAATAATAAAGTTAGAAAAGAGAACAGTAAATAAATTGCTAATGTTGTGAAAGAACTGCTGTATTCACTATTTATATTAGGAATAAAATtactgctcttatagaaaattaatcaacaacacaAATCAAAGTTACTGTTCTATCACCCTGAATagatgattattttacaataacatgctGAGGTGTTTTCCTTTtacaccatagcaatttgccaactattaacaatttttattttttaatcatacttttattgatttatagttacagttaatattGTGGAACTTCCACAAGACAAGTTCCTGGTATAACTTTGATTAGAGTAGCTATAAAAagtcgttccctcgccagcctcttttttcctctctcttgaagttaataaaacaaaaatgttaccGAGAAACATTTGCAGCCGGagctacagtcagagctgctgttagaaaatgatcagaaatcAGCATCAAAAATTCCACAGTGCTGCGGTATAGCACACTTATTAGCTATTAACGTCTAATCCCTAGTCTATATGACTCCCTAGACTGAAATTGAAttctttcattaaatttgtCCTCACGAATACAGAGAACATCTTTAGTCGTTATTTATAAGACACGTCTCTACTTATAGTGTCTTTATGTAATTCTTACAAAACTCCTCCATCCTTCTGAATTTCAAAAGACTCTTGAGCTCGCAGTGAAAGCGTTTGACTAATGAATGACAGAAATGAGGAAAACACGAACAAAAGCACGAGCAGCCTGAGCAGGTGTCTGAAACGACCTCGGCCTCGTCTCATCTCAGCTTCTTCATGTCCACAGCCATCCTGCTGCATGATTATACACTTCTCTTCATCAAGTTGGAAAGAAGTTGAGAAGCTTGTAACGTTTCCTCTGCTTTTTTCCAAGACACTTGACGCACCATTAATTTGATTCTACATGCTAATGATAATTATCTACACTTCCTTTGTTTTCTCCGAAGCTTTCACCGCTTCAGAGTGCTTTGCAAAAATGATTTCCAGCAGGtcccaatgttttttttttttttatcgctGCATGGTCTGCTTATTATCACCCGCCTGCTTACACTTCATTAGCACGTAAATATTTGGTGCAACTTTTCATCCCAGATTCTTAGAAGCCACGTTGATTTTGAGTCGTAATCAAACTGAAAGTGTGTAGAAACGTGCTAAGAATTGCATCAGTAGTTGTTACTTTAGTACAAAAAAACGTGTCCATAGCAGGCTCCTTTTGTTTAACCTCACAGATTTGTTTGAAATAGCAGACGAAGTGTTTAAAACTGGATTTTGTAATTaagatttattatttagattGAGACCCTGCACCCACCTGATTTCATTCCCTACACTGTAAAAAggattttgtttgtatttatattattattgatctatttatttattgtatttattttacactctaATGTCCTGACTAAAGTGTTGACATATCAGCTCAGATGAATTAATCTTATCCCTctgaaaatatgaataaaaacttTTATCTGAGATGAAACTGAGATCAGTCGTTGTGTAAGGAAAGAGATCACGAGGATCAGTTTCTTTATAGTCCTGTAGCATTTCTCTTTAGCTGCCAGGTGTGTTAAGAACATTTATTTCCACCACCTCTTGCCTTGATGTTTTCCACCTTCTCTGCGTTTGTAATATAAACTCATAAGCCATGATAATATTCTTGCATTACTTGAAGAAAATATGTTCGGTGTGATCACTGATATTCCATAGAATTGCACAGTATAACAACATCTCACAAAGGCAGAGTATTTATGCTGGTCTTACTGTTTGcattgccacacacacacacacacacacacacacacacacacacacacacacacactccctaaaCACTAAAGCagacactcatcacactaaatactatattaatatcacacacaaTTACCAGAATTTAATGATTTGAAAAGGGAATCTACATTCATTCATGTAAAGTGATACCAAAGCATTCCTACGTATGAATGGTGACATTAAAAAATGCATCCTAAGCAAAATACTGTACAGGATTAATGTTCACTTAGAAGtggtaaacatttcataatGACTAAAATAACATACAACAGAGAAAAGCCTGTATACTAAATTGCCAGTTTTTAGTTACGAGAGTGGTAAATCTAATAGACCTAAATCTAATCTAACTCAGTGTATCTCAAATGTGTGATGCTAATACACaactaatctctctctctctctctctctctctgtgtctgtctcacacacagacacacacacgcaggcacGCGCAccgacccacacacacacagacacacacacacacaaacaagaaaaTCAATAATCACATCCAAAATCAATACTGAGatgataaattaatgaatttctAGCCAATCTGAGAGATGACAAGCATTTAATTCGATGTGATCTCACGCTGATCATGTACATTCACTTGGGAGAGAATCTAATCTAAATATAGCAGCTAAAAGGTTAAAGGTTTTGTTTAAGGGCTCTGGTATTTGAACATAAAACCTTCAGGTAACTAGCATTTCAGCCACTGAGCCTGTCATTTataaagaaaacttcacattcaaacacaattaaacctttgtatgtgtgtggtggtctgggaaaacctgtcagatgaTGCTgcggctgaattctggcaaccAGCCACAAAAGACAATCAAACAGtagaaagtagcctaaataaaaacattttatatatatttaaccaaaacaatgtggaaatgttttttttttttaaatttaggcTACTTTTTAACCTTGACTTGgctatcttcctgcaaagatcacgtATGActagccagtttaacaaacgtAGTGGTAAACACAGTTATTCTGCCTAGAGATgactaaaaccttgctagctaagtatgatttcctcacacagtgaatgtcaggctttgTTTAAGTTATTAAATAGCTATGCGCCATAGAGAAATGGATACAAgtctaattaatttattttgtaataagaTACTGGCTGTCAAATTGTCCGCAATGCTCCTGCACCGTcgcatcatcatcaaaacagagaagagcacttataCACGCTGttctaaaaatgtgaaaatgacctaataaaagacattaataacaagaaatttacaGAACAGATgtgactgaattaatcagcgaTGATTTCATCAATGATGTTAGTGTGAACAGTGATCAGACGAGCGAAGAGACTAAGATGAGGTCTGTGTTTAAATGCCGTGAGTGaattttacctcaggtgatgagacacacactgatgctgataatcaaagtaaGAACTCATTTCCCCGTGTAAACTTAGAAGTCTTTcaaatttggcagtaatgttgtttttccataagtatactaggttataaatgtagacgtggaattgaaatgaaatgcaattttctcccttttcacttttatcTTCACTAAGTATCTAGACTTTTAAAATGCTAGGACTTCTGGACATCCCCTGTAGTTTTCATAACTACATATAGCAAAAAGtgtcaaaatttgaccatgtaAAGGGTTTGCCCAGGTCTGCGCACATATTTTATAGGGGGTTTGGGATTAAATGCAGCCAAATCAATATCAATACTTTTAACTGGTGTCTTATTAGCGTACATTGATCACTGAACCATGTGACTTTGGAGGTCACAATCCTTTTATAAATGAAAGTTAAAGTAGCTCTAAAAACCACAAATGAACAAGTTAGAGTCCTCGACTAGAAACTCCCTACAATCAGAATCTGTGTAAAGTATTTATAGTAGAACAGGTAACATTTCATGACATGTTGAGGGCTTGGAAGTAACATTTGCCAAGCAACTAAAGCAAACTTTGACTACAATTTGGCAATGTATTCAACCTGTTAGAAGATTTAGATATGATTTTGAtactagatttttttaaagaacttttTAATTGTCTAAAATGTGACTTATGCACCTCTACTACCAAGCCCTTGATATTATAACTTACACAATCAAGAAAATACTATGACtataagcaaaaaaaaccaaaaaaacatcatggatGCATTGTAGTGATTCTGTAGTGTTGTACAGGAGCTTGGCCTGTAGAGGACCTCTAGCACAGTGATTTTGGCCGCACCTTTGGAAAAAGCTGTAACGGGAAGAAATACGAGGTCAGACATTAGGCACAAACCTCAACAAGACAACAagacaagaacaagaaaaaaaactacacaccTAAAGATATAAAGGATGCATCGATACCAATCCTGGTATCAGGTATTGGTCCGATGTAATGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123680 True 4928 lncRNA 0.35 2 25013112 25108966

Neighbor

gene id symbol gene type direction distance location
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding upstream 1371 24991782 ~ 25011741 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 386083 24582204 ~ 24627029 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 545636 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 551409 24448341 ~ 24461703 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 585984 24392298 ~ 24427128 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 28048 25137014 ~ 25139561 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 31186 25140152 ~ 25155099 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 141376 25250342 ~ 25266857 (+)
yif1b yif1b coding downstream 159927 25268893 ~ 25282220 (+)
dusp8b LOC108264845 coding downstream 658452 25767418 ~ 25777506 (+)
G104520 NA non-coding upstream 333 25011916 ~ 25012779 (+)
G104523 NA non-coding upstream 77233 24935576 ~ 24935879 (+)
G104509 NA non-coding upstream 185965 24826766 ~ 24827147 (+)
G104429 NA non-coding upstream 249000 24762642 ~ 24764112 (+)
G104325 NA non-coding upstream 378707 24575492 ~ 24634405 (+)
G104739 NA non-coding downstream 133834 25242800 ~ 25243305 (+)
G104748 NA non-coding downstream 134515 25243481 ~ 25243878 (+)
G104751 NA non-coding downstream 136698 25245664 ~ 25245865 (+)
LOC117597584 NA non-coding downstream 231657 25340623 ~ 25342308 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding downstream 794860 25903826 ~ 25905288 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1250067 23739502 ~ 23763045 (+)
G103830 NA other upstream 1383389 23615103 ~ 23629723 (+)
serp1 NA other upstream 1437399 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1753855 23163646 ~ 23259257 (+)
relt relt other upstream 1864240 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 124659 25233625 ~ 25240213 (+)
G104781 NA other downstream 185933 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1722012 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2102423 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2417157 27526123 ~ 27545526 (+)

Expression


Co-expression Network