G104523


Basic Information

Item Value
gene id G104523
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24935576 ~ 24935879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123681
GAGACGTAACGTTTAAATCCTGAATAAAACGATGGAAGGAGAGGAACATTTGCATGTTAGTGAATTTTTGGTTCATGATAAAGTAGCACTGACTTGCCAGTAACGACGaacttttcctttttaaatatttttttcacaattaaaGCCTAAAGCTCAGGACACTCTTTTCAAAAGCAACTTGAAAAGCatttgaaaatgtatataatttgcCATTTTAatttcattattttgaaattcTTTCAATTACtttattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123681 True 254 lncRNA 0.30 2 24935576 24935879

Neighbor

gene id symbol gene type direction distance location
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 308547 24582204 ~ 24627029 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 468100 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 473873 24448341 ~ 24461703 (+)
yap1 yap1,LOC107746561,LOC107662128,LOC107758259,LOC107687356 coding upstream 508448 24392298 ~ 24427128 (+)
cep126 NA coding upstream 551130 24368079 ~ 24384446 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding downstream 55903 24991782 ~ 25011741 (+)
exosc5 exosc5 coding downstream 99634 25035513 ~ 25040089 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding downstream 201135 25137014 ~ 25139561 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 204273 25140152 ~ 25155099 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 314463 25250342 ~ 25266857 (+)
G104509 NA non-coding upstream 108429 24826766 ~ 24827147 (+)
G104429 NA non-coding upstream 171464 24762642 ~ 24764112 (+)
G104325 NA non-coding upstream 301171 24575492 ~ 24634405 (+)
G104284 NA non-coding upstream 363689 24564632 ~ 24571887 (+)
G104257 NA non-coding upstream 451480 24480365 ~ 24484096 (+)
G104520 NA non-coding downstream 76037 25011916 ~ 25012779 (+)
G104522 NA non-coding downstream 77233 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding downstream 121996 25057875 ~ 25061300 (+)
G104739 NA non-coding downstream 306921 25242800 ~ 25243305 (+)
G104748 NA non-coding downstream 307602 25243481 ~ 25243878 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1172531 23739502 ~ 23763045 (+)
G103830 NA other upstream 1305853 23615103 ~ 23629723 (+)
serp1 NA other upstream 1359863 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1676319 23163646 ~ 23259257 (+)
relt relt other upstream 1786704 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 297746 25233625 ~ 25240213 (+)
G104781 NA other downstream 359020 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1895099 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2275510 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2590244 27526123 ~ 27545526 (+)

Expression


Co-expression Network