Gene
RNA
| Item | Value |
|---|---|
| gene id | G104694 |
| gene name | hnrnpul1 |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 25113977 ~ 25151156 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| hnrnpul1 | Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing and response to virus. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleoplasm. Orthologous to human HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1). |
| description |
|---|
| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU123870 | False | 3940 | lncRNA | 0.39 | 3 | 25113977 | 25151156 |
| TU123871 | True | 4776 | lncRNA | 0.39 | 2 | 25146360 | 25151156 |
25,076,000
25,080,000
25,084,000
25,088,000
25,092,000
25,096,000
25,100,000
25,104,000
25,108,000
25,112,000
25,116,000
25,116,000
25,120,000
25,124,000
25,128,000
25,132,000
25,136,000
25,140,000
25,144,000
25,148,000
25,152,000
25,156,000
NC_047600.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| bckdha | bckdha,LOC107560150,LOC107758241,LOC107662140 | coding | downstream | 79095 | 25024817 ~ 25034882 (-) |
| siae | siae | coding | downstream | 337195 | 24767575 ~ 24776782 (-) |
| znf296 | LOC108264426 | coding | downstream | 363380 | 24739091 ~ 24750597 (-) |
| capn12 | LOC108264620,LOC108433431 | coding | downstream | 386955 | 24705004 ~ 24727022 (-) |
| fosb | fosb,LOC108433461,LOC107757073,LOC107554470 | coding | downstream | 427727 | 24680767 ~ 24686250 (-) |
| rasgrp4 | LOC108264291,LOC108428524 | coding | upstream | 4026 | 25155182 ~ 25182107 (-) |
| LOC117597607 | NA | coding | upstream | 144302 | 25295458 ~ 25301413 (-) |
| LOC113526534 | NA | coding | upstream | 153580 | 25304736 ~ 25319693 (-) |
| LOC113526369 | LOC108264860 | coding | upstream | 193069 | 25344225 ~ 25346964 (-) |
| LOC113526366 | LOC108264060,LOC108430275 | coding | upstream | 688314 | 25839470 ~ 25870271 (-) |
| G104320 | NA | non-coding | downstream | 579558 | 24533737 ~ 24534419 (-) |
| G104291 | six9,LOC108263903,LOC108433455,LOC107554476 | non-coding | downstream | 649399 | 24414900 ~ 24464578 (-) |
| G103820 | NA | non-coding | downstream | 1538298 | 23572589 ~ 23575679 (-) |
| G103817 | NA | non-coding | downstream | 1600649 | 23512157 ~ 23513328 (-) |
| G103727 | NA | non-coding | downstream | 1783876 | 23329676 ~ 23330101 (-) |
| LOC117597583 | NA | non-coding | upstream | 40901 | 25192057 ~ 25214790 (-) |
| G104747 | NA | non-coding | upstream | 87954 | 25239110 ~ 25241770 (-) |
| G104750 | NA | non-coding | upstream | 92316 | 25243472 ~ 25245244 (-) |
| G105092 | NA | non-coding | upstream | 682123 | 25833279 ~ 25836038 (-) |
| G105219 | NA | non-coding | upstream | 936324 | 26087480 ~ 26087695 (-) |
| tmem91 | tmem91,LOC107676753,LOC107757682,LOC107758240 | other | downstream | 34465 | 25043786 ~ 25079512 (-) |
| clasrp | clasrp,LOC107758246,LOC107662138 | other | downstream | 349816 | 24751653 ~ 24764161 (-) |
| G104473 | map3k10 | other | downstream | 402609 | 24623516 ~ 24711368 (-) |
| ttc9b | ttc9b,LOC108433430,LOC107756857,LOC107560155,LOC107758251,LOC107662133 | other | downstream | 451999 | 24631639 ~ 24661978 (-) |
| sipa1l3 | sipa1l3 | other | downstream | 539302 | 24480302 ~ 24574675 (-) |
| si:cabz01090165.1 | zmp:0000001073,LOC108264041,LOC108429879,LOC107692477,LOC107722287,LOC107566287,LOC107713869 | other | upstream | 234169 | 25385325 ~ 25548928 (-) |
| G105376 | NA | other | upstream | 1088174 | 26239330 ~ 26241005 (-) |
| LOC113526510 | LOC108264700,LOC108261657 | other | upstream | 1417929 | 26569085 ~ 26608339 (-) |
| si:dkey-151j17.4 | NA | other | upstream | 1993732 | 27144888 ~ 27160099 (-) |
| hipk3b | hipk3,LOC108264637 | other | upstream | 4469643 | 29620799 ~ 29714001 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G356954 | NA | non-coding | CI01000150 | null | 233137 ~ 234306 (+) |
| rainbow trout (Oncorhynchus mykiss) | G358483 | NA | non-coding | NC_048569.1 | CM023223.2 | 1925347 ~ 1925573 (-) |
| mexican tetra (Astyanax mexicanus) | G295960 | hnrnpul1,LOC107595510,LOC107685667 | non-coding | NW_019172826.1 | APWO02000044.1 | 1503393 ~ 1507087 (-) |
