LOC113526839


Basic Information

Item Value
gene id LOC113526839
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25233625 ~ 25240213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123920
ACAAATGGACCCTTCAGCTTCACTGCTTACATTGTTAGCTTCAGGCTATAAAACTAAAGtcaaaattaactttttttaatgtaaatgtaaacgaaTAGCTTGTTTAGATGTTGgtagaataataaataagatgTGCTGACAAGGAAAACTTAGAAGGTGCCGTTAAACAGCTGAAAAAACGtttattttttgcttaaaattaaaaaacagcGTCGCGAGGAGGAGATGGAGTTCTCTCTGATCCCAGCGCAGCATTATCCACTCGCCGTCATGGATTCCCCGTTGAATGGCAATACGTCCCTCCAGACGTCTGTCTCTAATCTGAATGCCAGCTTCTCCCGACCTGCAGAACAGGAGGACGAGGGCAAATTCTCCACCGACGCCATCTGGCTGTGGGTGGCCATCATTGCAACTGTCTGCAATATTGTGGTCGTGGCAGTGGTGTGTGCCTGTGCCTTTTAGACTCCGTAATGTGCAAGAACACAGCCTAGCCTCCTGATTGTCCCCCTCATTAGGCCCAAATAGAGCTTTAGAATACAATTTCTTACTTTATTCCAAAGATTAAATCTTTGGAAAATAAATCCTGGAATATGGGCTAATCCAGATCCTaa
>XM_026914236.2
GGCAGTTCATTCACTCTCACAAATGGACCCTTCAGCTTCACTGCTTACATTGTTAGCTTCAGGCTATAAAACTAAAGtcaaaattaactttttttaatgtaaatgtaaacgaaTAGCTTGTTTAGATGTTGgtagaataataaataagatgTGCTGACAAGGAAAACTTAGAAGGTGCCGTTAAACAGCTGAAAAAACGtttattttttgcttaaaattaaaaaacagcGTCGCGAGGAGGAGATGGAGTTCTCTCTGATCCCAGCGCAGCATTATCCACTCGCCGTCATGGATTCCCCGTTGAATGGCAATACGTCCCTCCAGACGTCTGTCTCTAATCTGAATGCCAGCTTCTCCCGACCTGCAGAACAGGAGGACGAGGGCAAATTCTCCACCGACGCCATCTGGCTGTGGGTGGCCATCATTGCAACTGTCTGCAATATTGTGGTCGTGGCAGTGGTGTGTGCCTGTGCCTTTTAGACTCCGTAATGTGCAAGAACACAGCCTAGCCTCCTGATTGTCCCCCTCATTAGGCCCAAATAGAGCTTTAGAATACAATTTCTTACTTTATTCCAAAGATTAAATCTTTGGAAAATAAATCCTGGAATATGGGCTAATCCAGATCCTaagaatatttatgtattttagatTAGAATGAATTAAGGTCCTGAAAAccatgtatatttatttacacaagtTGATGATAAACTCACATTGTAATGGTGAtaagctattaactgtttagtcataaaaatgtgtatatgtgaataCTTCTACAAACAGGTTATTTCCAGCAGGAAAGGCTATAGCAGGTCAGATCAGCAGATTAGGAATTATTTCAGATTTGAAATATGGACCCTTCCCCTAATAAGCCAAATCTCCAACACATAATCAAATATAGCTTTATAACcagtttgctgtgtgtgtatgagagtgtaatGAATTGGTGACAGATGTTGCTTGTTCAGAGGGGCTGTACAGTCCCACAGGGTCAGCTGAGTTTAGCTGAAATCATGCACAGCCATTATGTTTGATGTAACCCTACAGAACATGCATCTGCTGATTGGATTCTCATATCTtcattttacatacattatttaaggaataaacacttggAAGCATGCTGTATAGAAACATAATCAGTGGAGGTGTGCTGTGATGAGGCTCAGTGTGAActagttactgctaccaccccgaagttgattattttcctataaccgcatgtcctgaagtgttttattcctcttataccacggcaGTATGACAGTGATTGCagtcatttattaattacagaaaaacacatcCCATTTTTTATCgattatagttacagttaatgttgttgaacatccacaAACCAAATTAATTtctattatcacttatgttgta

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU123920 False 611 lncRNA 0.43 2 25233643 25239456
XM_026914236.2 True 1386 mRNA 0.39 2 25233625 25240213

Neighbor

gene id symbol gene type direction distance location
hnrnpul1 hnrnpul1,LOC106603088 coding upstream 78526 25140152 ~ 25155099 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding upstream 94064 25137014 ~ 25139561 (+)
exosc5 exosc5 coding upstream 193536 25035513 ~ 25040089 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding upstream 221884 24991782 ~ 25011741 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 606596 24582204 ~ 24627029 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 10129 25250342 ~ 25266857 (+)
yif1b yif1b coding downstream 28680 25268893 ~ 25282220 (+)
dusp8b LOC108264845 coding downstream 527205 25767418 ~ 25777506 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding downstream 548425 25788638 ~ 25839289 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding downstream 632269 25872482 ~ 25878200 (+)
G104522 NA non-coding upstream 124659 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding upstream 172325 25057875 ~ 25061300 (+)
G104520 NA non-coding upstream 220846 25011916 ~ 25012779 (+)
G104523 NA non-coding upstream 297746 24935576 ~ 24935879 (+)
G104509 NA non-coding upstream 406478 24826766 ~ 24827147 (+)
G104739 NA non-coding downstream 2587 25242800 ~ 25243305 (+)
G104748 NA non-coding downstream 3268 25243481 ~ 25243878 (+)
G104751 NA non-coding downstream 5451 25245664 ~ 25245865 (+)
LOC117597584 NA non-coding downstream 100410 25340623 ~ 25342308 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding downstream 663613 25903826 ~ 25905288 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1470580 23739502 ~ 23763045 (+)
G103830 NA other upstream 1603902 23615103 ~ 23629723 (+)
serp1 NA other upstream 1657912 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1974368 23163646 ~ 23259257 (+)
relt relt other upstream 2084753 23113084 ~ 23148872 (+)
G104781 NA other downstream 54686 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1590765 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 1971176 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2285910 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 2704577 27944790 ~ 27966308 (+)

Expression


Co-expression Network