G104739


Basic Information

Item Value
gene id G104739
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25242800 ~ 25243305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU123921
CTGTGATATCACTGTTGTTCAACTCTTGAATATGTGTGTTGGGGGTTAACATGCACTGTGCCTTTGATCACTCTTGTCTTTCAGATTGTGAGGAGCTTGCACATCAGGACGAGTGGATTCACCCGAGCTGATGGCGTGACACTGAAAAAATTCTGATACTGTGAGGATTTTGCCTGCAGATATGGCTTTAAGTAACATATTGACCCCTGACAGGGAACTTTGATAGAGAGTTTGGAGTTTCTGACTCCAGACAAAAAATAAGACATCTGTAATTATTTTAGTGGATCTCTACAGTTACGGCTAAACAGGACTGAGTGTGGGTTATCTTCATAAAGTAGGATTCTCAAAGAGGAGGCTTCAAAATACCAATACACTTCAATCATATACAAATGGAAGGCCTTTTTTGCACCCTGACTGGAGATGCAAGATTCAAAGATACAGACATTCTGATTTTGATCTTTGAAAAGAAATTTGAAGCATGCAGCAGGACAACTGAGCCAGCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123921 True 506 lncRNA 0.41 1 25242800 25243305

Neighbor

gene id symbol gene type direction distance location
hnrnpul1 hnrnpul1,LOC106603088 coding upstream 87701 25140152 ~ 25155099 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding upstream 103239 25137014 ~ 25139561 (+)
exosc5 exosc5 coding upstream 202711 25035513 ~ 25040089 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding upstream 231059 24991782 ~ 25011741 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 615771 24582204 ~ 24627029 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 7037 25250342 ~ 25266857 (+)
yif1b yif1b coding downstream 25588 25268893 ~ 25282220 (+)
dusp8b LOC108264845 coding downstream 524113 25767418 ~ 25777506 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding downstream 545333 25788638 ~ 25839289 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding downstream 629177 25872482 ~ 25878200 (+)
G104522 NA non-coding upstream 133834 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding upstream 181500 25057875 ~ 25061300 (+)
G104520 NA non-coding upstream 230021 25011916 ~ 25012779 (+)
G104523 NA non-coding upstream 306921 24935576 ~ 24935879 (+)
G104509 NA non-coding upstream 415653 24826766 ~ 24827147 (+)
G104748 NA non-coding downstream 176 25243481 ~ 25243878 (+)
G104751 NA non-coding downstream 2359 25245664 ~ 25245865 (+)
LOC117597584 NA non-coding downstream 97318 25340623 ~ 25342308 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding downstream 660521 25903826 ~ 25905288 (+)
G105320 NA non-coding downstream 1076704 26320009 ~ 26323500 (+)
LOC113526839 NA other upstream 2587 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1479755 23739502 ~ 23763045 (+)
G103830 NA other upstream 1613077 23615103 ~ 23629723 (+)
serp1 NA other upstream 1667087 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1983543 23163646 ~ 23259257 (+)
G104781 NA other downstream 51594 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1587673 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 1968084 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2282818 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 2701485 27944790 ~ 27966308 (+)

Expression


Co-expression Network