G105446


Basic Information

Item Value
gene id G105446
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26513436 ~ 26516780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124687
ACAAGGTCAAAATTACACGatggaaaacaaaaagcaaaataaaaccaatGCATGCTAACAGTGCATAACCCCCTCATTCCCCAACATAAACCAATCAGAACTGCTCAGAGTGTTTAAGCGAAGGTTCAAATCACTACACGACTTACACTTAACAAAAGGTAAATCAATCTCTCTGGGCGTTTGTATACCTTTCTCCATATATTCATAATGAGATATCAGGGTTACACTCAGCCATTATGGTTAAATAACATgttgctgtaataaaatgccCTGTTCACACTACTGTGTGATTCCCacgtgaacttttttttaaatgttggaCTGCACAGATGTAGCTCAGGCTGTGGTAGCAcagttaaacatgtttttgaagCAAACAAAAGGGTTACaggagtttttaaaaaaaaaaaaaaaaacaggtcagcTCCACCAAAAATCCAGCAGCTTGAGTTGTATTgaggttttattattttcccatcACCTGCTGCTCTCGATCTCACCGACACACCCAGCGAACAGGAGCAAACATGTCTGAGAGACTGTGGCGAGACGTTACAATCCAATCCACCATTCAACTAAAAACACTGTGTACAGCCACAAAACGTTCGCTTGCTAAACACAGCCTAGGTATCTGCTTTTCCCAAGATCCTTCACAACGCGAGTGTCAAACTGACTCAGTGGATACGAGTGTGTGAGGTGAACTTCTGCATGCTTACAATAAAACCACTAGAGTGCTGGGAGAGAATCAGATTTAAAATAGGAAACAAAGCCTATTATTATAGGATGGGATGAAAGATCTTCAGCTACTACATCAAGTAAACAGTCGTCACTCTCCCAGATATTAAAAATCATGCAAGACATAaaagaaaactccaccctgaaacacattaaacatggtTAGATTAAAAGACGTAAAGATTCAGGTGCTCGTATTGTTGTTATTCCTGTCAGTGGTTGTCTGCTGTGCTGATGTCATTGCTAGTTGAGttacaaatgagaaaaaaattcaacaatctcaaacatatgACAGGATGTTGGTCAGGTTTTGCTATTAGCtccttaaaacaaaaacagtccaTTTTcttactcaccattttccagcgaaGTTCaaagtcatattaatgagaaactCAGTGTAGAAATAGTGGAGACGTTGGTGCACATGTTGGACACGAAggtccagaatgcaatgcagctatatgctGAGACTCGGCTCGAATAATTACTGATCTGCGAAATGACGGTAATCATGGCTTTCAAAGCTGAAGCTCTGGaatctgatctgtttgagcagagtgtactgATGCGGAGGTGagacagctggacagactaaaagactaaagcgctgctgcatcgctctcttaaGGTAGAGATGAATCGAGGGCTAAATCCCTccggcaccactatcagcaggcagTCGAATGGAATTGTGGGTCGGAAATTGTTAACCAAGGTGAATACAGTCCGACATGTCAATGAAAGATGattaaacttaaaataaatcttggacacctTTGAAGATCATATGTTCTTTATAAAgccattcagggtggattttcccTTAAATACAGGCTAATGCCTTAAGGTTTGGtataaataaacactacacCTTCGCTATTTCACCATGCCGCAGAGATCATTAATATCACATCCCCTTCCTGACCTAGCCTCCTTAAGCCACCTTAAATAACAACAGGAAATGAGCCATGCCTTGGTTTAAATTAGATAAGCCACCGATCAACAGTAACAATGAGCTATTTAATGGTGCAAATGAAACCAAAAccaaatctaataataataataataatgaggaaGGCATTTAAATGGAGAAGGGGGTAAAAATGTCCAGGTGGATCACATGGTGATTTCTGGTAAGGAGAGATGTGAGTCTTAAGTAATGTCCCTCAAAACACGTTTGCAGGATGTGTAAAAGGAGTACTGACGCAACAAGACGGCAAAATTTCGCCCAAAAGAAATGGACAGGTCCCACCCCCATCACCTGACGAAGACTTGGGTTATGAACCAATTGATTGTATGTAGATTAGGAAGCTGAAGATTTGAGGGAAGTCGTAAAATAGGTACATCTGCAGTGTGGACAGTGACATtaaaaagggatttttttttttttaaggcaataATGGTCATGTTACAGATTTCCCCCCCACAGGAATGGAACAGGGCATCATAAATAAGCTTTACAAAAAcaattttgatcattttgtgGCTTTCCTTAATAAATTTTGTATAATCTCACTGACTGCTTAATACTTCAACCTTGCTATGTGCCCGAGTtgacaggaaacaaaaaaaaggttttacatAACAGCGGTGATGTAATAAACACAGCAGGAATCACACTGGTTAAAGAGGAATGGTCACAATTGCAGTTAATGACAGCGTAAGCCACACATCACTTCCATTCTCAcaaggggaagaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaacagcagtagtCATAATGTGTACATAAAACATGTTTAAGATATTCCTTTTGTCAACATGAGGATATCCATTAAGTAATTTATCCTTATTCTATTTGCAAGATAAATCTTCAGATGGACGTTCCGCGCTATGCAGGCATGTTTTTAAGCGATCCAGTCCTGTCTGAAATGCAAAAGTTCTCTCTGCGATACATCTTTATAAGTTTACTTACAGGCGGAAATCATTTCGATGACTTTACAGTGAACTAGTCCAACGTGCCTggtcagattttcagtgtgaccAGGAAAAAGCTCCAAAGAGAACAAGAGGATGGAGTGGTGATGGCATTTAACCTCCATCTCTaagaaacaacaaagaaaaaaaaaaacaaacaaaaaaaaccaaaacaatgtgGGTTCTTCATTACAAGTGTTGATCACTTAAGTCTCCTCCGCCCAAACCTAGTCTCtccccttttctttttctccataaTGTTCACGTTTTAAGTCTTCGAGAAATAAGGGAGGCTCGGGTAAGCGCTGATATCCAAAAGCCTGTTATTGTGTAGGAACCTTGGCATTTATGCAGGACTTATGACTCCGATCACAGGACGTCCATCCATGAAGCGAGAGGTCACGGGAATCACTCTAGAAATCTGCCGTATTAAATTCCGCTCTGCCAACCAAACAGCCAAAGAGAAAGCAGGAAGAACGGAGAACTAGTGGGAGGGAATGAGCAGTGACGCATAGTACAGAGAACATGGTAGAGGAATATGTTTTACCCGTTAACTCTCCAAGCCCACTCAGTTCAGAAGTCTATAATCCAGACATGGTGAATCTCCAACTAGCAAGACGATGAGAGGCGGTTgagagggga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124687 True 3321 lncRNA 0.40 2 26513436 26516780

Neighbor

gene id symbol gene type direction distance location
ubl7b LOC108264398 coding upstream 201934 26303120 ~ 26311502 (+)
insyn1 c4h15orf59 coding upstream 430163 26009102 ~ 26083273 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding upstream 635236 25872482 ~ 25878200 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding upstream 674147 25788638 ~ 25839289 (+)
dusp8b LOC108264845 coding upstream 735930 25767418 ~ 25777506 (+)
chrnb4 chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347 coding downstream 37688 26554468 ~ 26565211 (+)
chrna3 LOC108264698,LOC108414155,LOC108240269,LOC107381279,LOC103462694,LOC106937773 coding downstream 51815 26568595 ~ 26578544 (+)
LOC113526907 LOC108264702 coding downstream 98042 26614822 ~ 26622142 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding downstream 105666 26622446 ~ 26634497 (+)
LOC113526591 NA coding downstream 119629 26636409 ~ 26644829 (+)
G105320 NA non-coding upstream 189936 26320009 ~ 26323500 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding upstream 608148 25903826 ~ 25905288 (+)
LOC117597584 NA non-coding upstream 1171128 25340623 ~ 25342308 (+)
G104751 NA non-coding upstream 1267571 25245664 ~ 25245865 (+)
G104748 NA non-coding upstream 1269558 25243481 ~ 25243878 (+)
G105450 NA non-coding downstream 9140 26525920 ~ 26527807 (+)
G105449 NA non-coding downstream 14555 26531335 ~ 26532088 (+)
G105479 LOC108264702 non-coding downstream 94161 26610941 ~ 26611260 (+)
G105490 NA non-coding downstream 174654 26691434 ~ 26691677 (+)
G105548 NA non-coding downstream 181198 26697978 ~ 26698178 (+)
G104781 NA other upstream 1198223 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1273223 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 2750391 23739502 ~ 23763045 (+)
G103830 NA other upstream 2883713 23615103 ~ 23629723 (+)
serp1 NA other upstream 2937723 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 314198 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 694609 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 1009343 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1428010 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1550102 28066882 ~ 28070685 (+)

Expression


Co-expression Network