G105479 (LOC108264702)


Basic Information

Item Value
gene id G105479
gene name LOC108264702
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26610941 ~ 26611260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124727
CACTGCAGAACTTTCTGGATTGTACACATGCCTTTACTCTGAAGAGAAACTCAGTGTCAAAAAGACAAATGCAAAAGGACACAACTCTGTCTCACTCAAGGTTTTGGGAAAAATATTCCCGGCGAAGATTGAAAGAACAGAAACGTCAACACTGACCTGCACCTTTACAAAAATTCAAAACTGTACTCAAGTCTACGTTTATCTCTGCTTAAATGGGATCGGAAACAGAACGAAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108264702

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124727 True 235 lncRNA 0.40 2 26610941 26611260

Neighbor

gene id symbol gene type direction distance location
chrna3 LOC108264698,LOC108414155,LOC108240269,LOC107381279,LOC103462694,LOC106937773 coding upstream 32397 26568595 ~ 26578544 (+)
chrnb4 chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347 coding upstream 45730 26554468 ~ 26565211 (+)
ubl7b LOC108264398 coding upstream 299439 26303120 ~ 26311502 (+)
insyn1 c4h15orf59 coding upstream 527668 26009102 ~ 26083273 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding upstream 732741 25872482 ~ 25878200 (+)
LOC113526907 LOC108264702 coding downstream 3562 26614822 ~ 26622142 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding downstream 11186 26622446 ~ 26634497 (+)
LOC113526591 NA coding downstream 25149 26636409 ~ 26644829 (+)
nptnb nptn,LOC108431650,LOC107715830 coding downstream 37291 26648551 ~ 26681425 (+)
hcn4 hcn4,LOC108263998,LOC102793391 coding downstream 83623 26694883 ~ 26789255 (+)
G105449 NA non-coding upstream 78853 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 83134 26525920 ~ 26527807 (+)
G105446 NA non-coding upstream 94161 26513436 ~ 26516780 (+)
G105320 NA non-coding upstream 287441 26320009 ~ 26323500 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding upstream 705653 25903826 ~ 25905288 (+)
G105490 NA non-coding downstream 80174 26691434 ~ 26691677 (+)
G105548 NA non-coding downstream 86718 26697978 ~ 26698178 (+)
G105733 NA non-coding downstream 452095 27063355 ~ 27063862 (+)
G105732 NA non-coding downstream 453431 27064691 ~ 27066023 (+)
G105841 NA non-coding downstream 518088 27129348 ~ 27129629 (+)
G104781 NA other upstream 1295728 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1370728 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 2847896 23739502 ~ 23763045 (+)
G103830 NA other upstream 2981218 23615103 ~ 23629723 (+)
serp1 NA other upstream 3035228 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 219718 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 600129 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 914863 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1333530 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1455622 28066882 ~ 28070685 (+)

Expression


Co-expression Network