G105569 (LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845)


Basic Information

Item Value
gene id G105569
gene name LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26830978 ~ 26833427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124829
AGCATAATGAGCATACTGAGTACTTGGGCATCCTAGCACCTGCTTCCTCCCTTCGTGCCCTAGCCGTCTCCTCTTACCTGCCGGTCTTGGTGAGAACAATTATAGCACTGGCGCAGCATTTGAAGGCGGACTCGACGGCCCCAATGGCTACGGCCTCTGAGGGGTCCTGGCTTAGTTTCGTGGAGCGCCTCAGCTCCTCAAACAGCTGCCGGTGGAACATGGCTGCTTCTGCCTCCCTGGCAATGTGCTGTGTGCGCACTGCTTCCAGAGGgtagtctccctttgctgtcTCTCCACTCAACATGATGCAGTCAGCCCCATCCAGAACAGCGTTAGCCACATCACTGCCCTCTGCACGCGTGGGACGGGGCTTCTTGATCATGCTCTCCAACATCTGGAAACAGAGGACAGGAAAAATGTTATGCATCACTTTTCATGTTCTTGAGCATGGGAAAACATCCTGTCTGCACAGATGaaacaagaaaaacagaacCTGAGTATCTCTGAAACACTCACACCTataaatgacaaaacaaaacaaaaaaaatgccaacAATTAAACCCTAACCTGTGTGGCACAAGTGATTGGCTTGCCAGCTCTATTGCAACGTCCAATCATCATCTTCTGGGCGAGGAAGACCTTCTCCGTGGGGATCTCAATACCCAGGTCACCACGGGCAACCATGATGCCATCGCTGGCCTCCATTATCTCATCAAACCTGCaagcaacagcaacagcaacaattCTACGATTTCTGCAGTTATCAAATAcgagaattaaaatatttcagctaATGGAAATGCGTGCTAAAGCTGGCAGGAAAAATTGAcctattggggaaaaaaaaaa

Function

NR:

description
PREDICTED: pyruvate kinase PKM isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124829 True 850 TUCP 0.49 2 26830978 26833427

Neighbor

gene id symbol gene type direction distance location
dhdh.2 dhdh,LOC108431994 coding upstream 3956 26821167 ~ 26827022 (+)
hcn4 hcn4,LOC108263998,LOC102793391 coding upstream 41723 26694883 ~ 26789255 (+)
nptnb nptn,LOC108431650,LOC107715830 coding upstream 149553 26648551 ~ 26681425 (+)
LOC113526591 NA coding upstream 186149 26636409 ~ 26644829 (+)
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding upstream 196481 26622446 ~ 26634497 (+)
LOC113526325 parp6 coding downstream 17535 26850962 ~ 26875332 (+)
si:dkey-205h23.2 celf6,LOC106535005 coding downstream 79901 26913328 ~ 27063061 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding downstream 272039 27105466 ~ 27107571 (+)
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding downstream 286758 27120185 ~ 27128413 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding downstream 725013 27558440 ~ 27600569 (+)
G105548 NA non-coding upstream 132800 26697978 ~ 26698178 (+)
G105490 NA non-coding upstream 139301 26691434 ~ 26691677 (+)
G105479 LOC108264702 non-coding upstream 219718 26610941 ~ 26611260 (+)
G105449 NA non-coding upstream 298890 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 303171 26525920 ~ 26527807 (+)
G105733 NA non-coding downstream 229928 27063355 ~ 27063862 (+)
G105732 NA non-coding downstream 231264 27064691 ~ 27066023 (+)
G105841 NA non-coding downstream 295921 27129348 ~ 27129629 (+)
G105855 NA non-coding downstream 308418 27141845 ~ 27145031 (+)
G105904 NA non-coding downstream 396357 27229784 ~ 27234224 (+)
G104781 NA other upstream 1515765 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1590765 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 3067933 23739502 ~ 23763045 (+)
G103830 NA other upstream 3201255 23615103 ~ 23629723 (+)
serp1 NA other upstream 3255265 23572551 ~ 23575713 (+)
G105898 LOC108264731 other downstream 377962 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 692696 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1111363 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1233455 28066882 ~ 28070685 (+)
def8 def8 other downstream 1312836 28146263 ~ 28161869 (+)

Expression


Co-expression Network