G105732


Basic Information

Item Value
gene id G105732
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27064691 ~ 27066023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU124999
AGCTTTTCTTTCAAATTTATTACACGTGGAAACACCTATGAATTGTTCATAAATTCTTTGTGAATCTGGTTGTAAAACTACCAAAACAGTGTCAACAGTTTTCTGACCGATTTAGCttgtaacatttacaaattttggATAAGAACAACACTTCCGAATACTTCTGAAATATAGAATgatacctttatttatttatgtaatttatttatttatttatttttgtcaaggGTAGGCTCAGTGGTTTACAGTGGCCAGACAATCTGCACGGAATAGTGGAGTAGGCAGGGAATCATGGATGTCaaaaaacgaacaaacaaacctGACCTCTGATCTTTAATGCCAGCATATCAGACCTCACTTTTAATCCTTTAAATCCTCTTTAGGAATTCCCAAAGGACCAAAATTGTGCAATTCAAATCTGCTGCCTCCCCTTGCCAAATGAAATTTGTCCTTCCTGCCTGCTTCCACTGGACTGAATGCAAGAATTTGGTTTTGTTTAACTGTGACCTCCTGCCTGTCCTGTTCTAAAGCCCAGAAGTTCTTATTAGTTCAAATGTATGATAGGAATTGTGTCTAGAGATTGTAAACACCCGGTCAAGCTTCGCAAAATTGACAAAAGTAGCACAAATATCAAGATGTCAGATGCTCTACACACTAGAAGTTAAGATAGTTTTGGAAAACCGAGAACTGACTAGCAGATAATGTAATATGttctttgctgttttaaaattttctaaacgactttttttttttttttttattaatttccttTTACTGTCGGTTACCATACATGCTTATATTTCTTTGTTCAATTCAGCCACGAAGATCTGCTGTATCCTATCCCTACTACATACAATCTGAACAATTTGCACTAGTTATCACCTCACTATCTGCCAATGATTTTATTCCATTGTACTAGAAAATATTGTCTGAATAATACACATcaaaaatgcttaaaatcatCCTCAGTTAATCATCCTggaattattcattattatccGAGTCTTTAAACCTCTTAGTGTAGGATTGGAAAACTTTCTTTTACTGAGAAAGAAACTGGATGCAGATTTTACAGAAGTGCCAAACTGTTTTATCTGAAAGGTtgatttcagttttcttttcttttctttcttttcttttttttttttgttccagagCTACATACATTTGGCGAATGCCCTCTATCATTATTGTTATCTCAGCACTTAACTTCACCTCTACCTTTTTATCTACAGACATTCATTTCACAAAAAGACCCATTCATTCAGGTTGTTGTGGCTTTTTTGTTGCAGCTGTAAATGTAGGACATCTGGGAAGCACATGTATTATTAAG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124999 True 1333 lncRNA 0.34 1 27064691 27066023

Neighbor

gene id symbol gene type direction distance location
si:dkey-205h23.2 celf6,LOC106535005 coding upstream 1630 26913328 ~ 27063061 (+)
LOC113526325 parp6 coding upstream 189359 26850962 ~ 26875332 (+)
dhdh.2 dhdh,LOC108431994 coding upstream 237669 26821167 ~ 26827022 (+)
hcn4 hcn4,LOC108263998,LOC102793391 coding upstream 275436 26694883 ~ 26789255 (+)
nptnb nptn,LOC108431650,LOC107715830 coding upstream 383266 26648551 ~ 26681425 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding downstream 39443 27105466 ~ 27107571 (+)
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding downstream 54162 27120185 ~ 27128413 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding downstream 492417 27558440 ~ 27600569 (+)
trnal-caa_8 NA coding downstream 492813 27558836 ~ 27558946 (+)
trnal-caa_9 NA coding downstream 494364 27560387 ~ 27560497 (+)
G105733 NA non-coding upstream 829 27063355 ~ 27063862 (+)
G105548 NA non-coding upstream 366513 26697978 ~ 26698178 (+)
G105490 NA non-coding upstream 373014 26691434 ~ 26691677 (+)
G105479 LOC108264702 non-coding upstream 453431 26610941 ~ 26611260 (+)
G105449 NA non-coding upstream 532603 26531335 ~ 26532088 (+)
G105841 NA non-coding downstream 63325 27129348 ~ 27129629 (+)
G105855 NA non-coding downstream 75822 27141845 ~ 27145031 (+)
G105904 NA non-coding downstream 163761 27229784 ~ 27234224 (+)
G105981 NA non-coding downstream 432408 27498431 ~ 27498630 (+)
G106064 NA non-coding downstream 536135 27602158 ~ 27602734 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 231264 26830978 ~ 26833427 (+)
G104781 NA other upstream 1749478 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1824478 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 3301646 23739502 ~ 23763045 (+)
G103830 NA other upstream 3434968 23615103 ~ 23629723 (+)
G105898 LOC108264731 other downstream 145366 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 460100 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 878767 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1000859 28066882 ~ 28070685 (+)
def8 def8 other downstream 1080240 28146263 ~ 28161869 (+)

Expression


Co-expression Network