G105733


Basic Information

Item Value
gene id G105733
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27063355 ~ 27063862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125000
AGATTTAATGTAGATTCTAAGAGTAGATTTGCCaattttttgctgttttctttttttattgacaaaaaATACTTGAACTTgtaatgaaaaaaggaaaaatatacaaaaaaagaaacactatgaaaacaaacaaacaaacaaaaaaaaaatcattgtctGTCTTATTGGCCGCTCGCTCTAGAAAATATGTAATGGATGGATTATACAGCTCATCGCAATGTCTTCAACATGCCACATTTAATGAACGGATAAAGCAGCTCATCTCAATTTCTTCACCCTGCCATCTGACAGCTACTGTGTCTAACTGTGTCAAAAGGAAGCTggaaagtgaggaaaaaaaaacaaggaatgaACGTAAAGGAGTGTCTAAAGTCTGTACTTGACAGGGTGCAGGCTTCCCATAAGCCTTTTTGTTCAAGCGACAATCCACTGTAAAGACCAAGCTACTGGATATGATGTGgactctcttcttttctttactCTTTTTTGTATTACGCCAGGGAGCGCG

Function

GO:

id name namespace
GO:0042136 neurotransmitter biosynthetic process biological_process
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process

KEGG:

id description
ko04724 Glutamatergic synapse
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU125000 True 508 lncRNA 0.36 1 27063355 27063862

Neighbor

gene id symbol gene type direction distance location
si:dkey-205h23.2 celf6,LOC106535005 coding upstream 294 26913328 ~ 27063061 (+)
LOC113526325 parp6 coding upstream 188023 26850962 ~ 26875332 (+)
dhdh.2 dhdh,LOC108431994 coding upstream 236333 26821167 ~ 26827022 (+)
hcn4 hcn4,LOC108263998,LOC102793391 coding upstream 274100 26694883 ~ 26789255 (+)
nptnb nptn,LOC108431650,LOC107715830 coding upstream 381930 26648551 ~ 26681425 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding downstream 41604 27105466 ~ 27107571 (+)
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding downstream 56323 27120185 ~ 27128413 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding downstream 494578 27558440 ~ 27600569 (+)
trnal-caa_8 NA coding downstream 494974 27558836 ~ 27558946 (+)
trnal-caa_9 NA coding downstream 496525 27560387 ~ 27560497 (+)
G105548 NA non-coding upstream 365177 26697978 ~ 26698178 (+)
G105490 NA non-coding upstream 371678 26691434 ~ 26691677 (+)
G105479 LOC108264702 non-coding upstream 452095 26610941 ~ 26611260 (+)
G105449 NA non-coding upstream 531267 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 535548 26525920 ~ 26527807 (+)
G105732 NA non-coding downstream 829 27064691 ~ 27066023 (+)
G105841 NA non-coding downstream 65486 27129348 ~ 27129629 (+)
G105855 NA non-coding downstream 77983 27141845 ~ 27145031 (+)
G105904 NA non-coding downstream 165922 27229784 ~ 27234224 (+)
G105981 NA non-coding downstream 434569 27498431 ~ 27498630 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 229928 26830978 ~ 26833427 (+)
G104781 NA other upstream 1748142 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1823142 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 3300310 23739502 ~ 23763045 (+)
G103830 NA other upstream 3433632 23615103 ~ 23629723 (+)
G105898 LOC108264731 other downstream 147527 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 462261 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 880928 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1003020 28066882 ~ 28070685 (+)
def8 def8 other downstream 1082401 28146263 ~ 28161869 (+)

Expression


Co-expression Network