G105904


Basic Information

Item Value
gene id G105904
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27229784 ~ 27234224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125251
TGCCCTTTTTAAACCTTTGAAATATATTGCAAAAGAagagttaaaaatatataaaaatatctacCACTAAAATActgatggcaaaaaaaagaaggaaaatgacaatatagaaaaaaattccAAAGTATCAGCTATATTTACCTGAATATAAATTActtaatatgaattaaaaaaatatttctacatcGCCCATTTTTGAACTTTTGTAGCATgtggcattttcattttttctctttttccttatttttttacattattgctTATTTTGCAAAAAAGAATGAGGGTGATTTGTGTTGTGGGGAAATGATCAGTATATTTTAACTGTTCTACTGGGTAACACCATGCTTGTCAGGCAaaagttaaacattaaaacccATTACAAGCTAATACTTTTAATTGTGTATTGCAGTTGCAGAAGTGCAGTTTAGAGGCAGCAGGAGTTAGAAGTGAGAGAGCAGGTTGGAGAAAGTGTTGCTACACGCATGACGCATTTCCAGTATTAGTTGCCCACCCTCTGGCACAGCACACTCAAAAACAAGCAGCAGGCTACAGAAGCCTTCTGTCTCACCCCAAACCCTCTcactcacctacacacacaaacacacacacatgcattccaCTGCTGCAGGTGCAGGACGCAATTACTGACTGTTATCTGCTaccgtgtgagtgtgtgcgtgtgtgcatgtgcttgtgtgttagGAAAGGAGGGACCAGAGGAGATCACAAGTGATGGTCCACTAATGACCATCCTCCAGCCCAGCAGCAGAGTGTGTGATTCTCAAGCCTGGCCTCCTTAAATCAAGAGTATATAAGCCCTTAGGCATTTTATGAAGATTGACTGGGTGAGTTGGGTGACATCATCATTTACATCTAGGGAACACTTTAACCCTGCGTCGTAAGACTGACATAACCGTGTCATAAAGGTCTCATGGAAATAGGCACATGCTGTCAtgagtttttattatattaccaTTATGaaaatctttataaatatttcataccATGAACATATTCGTTTCTGATGGACAGGCAGGTatcaattatttttcttttaaaccacATCCCTGTTAAATAATTCCGActtcaaggtttatattaatgcggtCCGTCCAaaacgttattgtttctgtaataaCGTACACAGGGACTTACATGGTGGCCACTCAATATAAAGGGATTTTATGAAGATGtggaattgttgatatggtgaagctttctgtgaggagatttatttctttaaggagattctgtgtagagtttatttaacaattttggaaggagtctccagtgtcagtgcttgttACGCTCAGAGGGAAAGctgtaaatttatattttcataaagtTTGTTTGCCactggaaaagtcttcaggacagagagctttgcagtttctttgtAGCATGaaaagctggatttttttttttgtcttattaacttcaagagagaaaactagaggctgctgagggaacgactgtttagagctgctataacattGGAAAGGTCATATTTGGTAGTGGAGAACGCAGGATTCAAATACACGTCTAAGGCTACATAGGAAAAGTCCAGTGCCTCAGActtttgtttcgTTACAGTCTGCTAAAACACTGTGAATGTTCTTGTCTTAGGGAATGTCTTAGtcaactgaaaatggaaacctatGGCACGTATTCAGTCAATACTTATTTTTGCGGTATCGAAAACGTATGGTATTGAGACACCACTGTATCTTATCATATCAAGGTGAATTGTGTGTATCATTACACCACTAACTGCTATACAACAGGACATGCATTCAGGTCTATAAATAtctggacattgacaaagttagcTAAAGTTAATTTAGGTTGAAATTGAATAATTAATATGAGACTTTCTGCTTTAAGATAAACAGTGTAGGACTTCCAGCACTTCTTATATGTGCATAATCAAACATGATataaacataatcataaattatttttaatacttggttgcacaTTCTTTGCAgttaatgactgcctgaagaatGGAAcacatagacatcaccagacgatgagtttcttccctggtgatggtCTGTCAGGTCTTTcctgcagctgtcttcacttcctgcttctTCCTGGGGGtgtttgccttcagttttgacTTTaacaagtgaaatgcatgctcagttggattcaggttgggtgattgacttggccattgcagaacattccacttctttgcctttgAAAGTAACCCAAGACTTTTTAAGTGTGCTTCTGGTCactgtccatctgcactgtgaagctccatccaatgagttttgaagcatttggctgaatttgagcagataatatagctcTATACACATCATCCTGCTCCTTTTGtcaagggaaccagttccactggTAGCCATACACTCCCATCTCATGacatgaggtggtatgcttcagatcatgagcagttccatGCCTtgtccatactcttctcttcccatcattctggtaccagctgatctttgtctcatctgtccaaaggacATTGCTCCAGAActgtacaggctttttttttttttagatgtttttggcaaactctaatctggtcttcctgtttttgaaacttaccagtggtttacatcttgtagTAAACTGTCtatatttactctggtgaaatcttctcttgattgttgactttgacacagacatGCCTACCTCCTAAAGGGTGTTCTTAATGTGACCAGCTGTTGTGagggggtttttcttcaccaggaaACAAATTTGTCCATCATCTACTACAATTATTTTCTGTGGTCCtctgggccttttggtgttcctgagctcagcagtgcattctttctttttaagaatgtaacaACTAGTTGATTTGTTACATGGTTGATCTCTCTTattggtttgttttgattttttatcCTAATGATTGCTTGCTTCATTGGCAGTTACTGCTCTTTgcacttcatattgagagttacaAATGCAAATGGCACACCTGAAGTCAACTCTATAACTTTTATCTGCTTATGTGTAAGTGAAATTACGAGGAAATAACAAACATCTGGCCATGCAATACCTGAAcagccaattgtccaattacattGGTCCATTAAAAACTGGGGGTCCGTAATGTATAAGAAAATTCATTCCTACAacatcatattcattatttatacatataaactGTGGTAAAGAGCTAGAATAACAATAACTGCAGTATGTCAATGTCCAGATATTTATGGACTTAACTAACATGTCATGACAACTCATGACAGCGTATGACACATTACGTGTTTATGATGTGGTTGTGTAATTCTTATGGTACAGAGACCAGGTGAAGTGTTACCTAAATCTGCAATCTTTTGATCAATTAAAATAAGCTGTTTGAAAGGTATTTTAGAAGTACAATGCTTTGAGTGAATTAGAATGAAGGGGGGTCAGTATCAGATGAGAAATAGGATGAAATTATAAAGTCATGCCCACCCCCTCCACAAAATACCCACATTTTCCATGATGCCACACTGacgatatataaaatattttctaaaatctaTGACCAGATGCATGATGGGCAatgatgtatttgtatttgtataaagAATAGCTAAAAAGATCAGATGATTAACAGAGAACCCTGCAAGAAAGCTTCACCACCAAAGTTGACAAACAAGAAAATGCAAGAgggaaagaaaattaaaaaaaaaaaaaaaaaaagaaagagaaaagaggtaAACTGCAACGATCTGCAGCAAACAAGATCCAGCAGGTGGCAAACCCATCAAACTCATCAACTCACTGGCAGGGCAATGGGACTCAAACCCAGCAGCAAATGAGCAGCTGAACAGAGTGCCATGATCCTGATCCTGCAAACTAGAGCTGAGAACTTTCATCAACAGTTTTTCAAAtgcctgctcacacacacacactggcaacGAGTGAGTGGCACATTCTTAAAATGTGgcatttataatacattaagAATTTGTCTGCAGCTAAAGGACATACTTATGATAActgatttgttaaataaaaatggccTTATCACTATGTATTTtcaataagagtgtgtgtaggtgtttttcctgatgtgccagtgtgtgtgtgcaagtttGATAGAAAGCCTCGGCGATGTGGTGCCATGCGAAACAGCACAGCTTTTTGTCGTGCAGAAATGTATTCTGACCTCTCCATCCCCAGCCTAGAGAACCCGGCGTCCACACCAGGAcagaacgcacacacacatacagaactCAGTGTTAATATCCCGGCTCCATGTGTATTCAAAGACAAAAGATGGAGACAAAACGGCAACACCAGACAACAAGAGATACTGCTGCTGCATACCGACAAATTTTTCCTTAGAATAAAGCAAGCAGATCAtgacaaaagaacagaaactTAGCTAACTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125251 True 4385 lncRNA 0.38 2 27229784 27234224

Neighbor

gene id symbol gene type direction distance location
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding upstream 101371 27120185 ~ 27128413 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding upstream 122213 27105466 ~ 27107571 (+)
si:dkey-205h23.2 celf6,LOC106535005 coding upstream 166723 26913328 ~ 27063061 (+)
LOC113526325 parp6 coding upstream 354452 26850962 ~ 26875332 (+)
dhdh.2 dhdh,LOC108431994 coding upstream 402762 26821167 ~ 26827022 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding downstream 324216 27558440 ~ 27600569 (+)
trnal-caa_8 NA coding downstream 324612 27558836 ~ 27558946 (+)
trnal-caa_9 NA coding downstream 326163 27560387 ~ 27560497 (+)
gcsha gcsh,LOC108421035 coding downstream 475952 27710176 ~ 27713570 (+)
nob1 nob1 coding downstream 612594 27846818 ~ 27854765 (+)
G105855 NA non-coding upstream 84753 27141845 ~ 27145031 (+)
G105841 NA non-coding upstream 100155 27129348 ~ 27129629 (+)
G105732 NA non-coding upstream 163761 27064691 ~ 27066023 (+)
G105733 NA non-coding upstream 165922 27063355 ~ 27063862 (+)
G105548 NA non-coding upstream 531606 26697978 ~ 26698178 (+)
G105981 NA non-coding downstream 264207 27498431 ~ 27498630 (+)
G106064 NA non-coding downstream 367934 27602158 ~ 27602734 (+)
G106118 NA non-coding downstream 492178 27726402 ~ 27729161 (+)
G106343 NA non-coding downstream 863505 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 999583 28233807 ~ 28244868 (+)
G105898 LOC108264731 other upstream 15214 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 396357 26830978 ~ 26833427 (+)
G104781 NA other upstream 1914571 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1989571 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 3466739 23739502 ~ 23763045 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 291899 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 710566 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 832658 28066882 ~ 28070685 (+)
def8 def8 other downstream 912039 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 1565240 28799464 ~ 28804072 (+)

Expression


Co-expression Network