ddx11 (ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896)


Basic Information

Item Value
gene id ddx11
gene name ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27526123 ~ 27545526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125360
GCCTCTTGTGGATGGCAGAAGTCCAGGGAAGGCTTTAATCGAAAACCTGTGCATGAAGGCTGTTAACCAGTCAATAGGCCGGGCGATTCGTCACAGGGGTGATTATGCCTGTATCGTGTTGTGTGACCGGCGCTACGCCCGCACTGGCACACTGCAGAAACTTCCGGAGTGGATCCGAAGCAGCACAAGCACTCACAGCAACTTCGGGCCGGCCTTCGCCAGCATCAGGAAGTTTTTCCTGGAGAAGCGACAAACACAGCACTGAGCAGAAGCACACATGACCTCAAGTCTATATCTGTCCAGATTCaagttctgttttcttttttcttttaagaccCTGTGTGCATGTAGTTGTGTAATCCTGTAAAAGCcatgtaaataattaacattcCTCCTGTCCGTTTCTTCTGTGCTGGTTTTTCTGTGTTGAGTCCAACTCTGAAATTTGTACAACGTTCATGTGAGACTGTTACAgtttaatgtgaataaaatcaatataa
>XM_026914193.2
TGGCGCGGACCTTCAAGGAAGTTTAGTGCGAACAGCTGAAGTAGCTAAGCGGTCTTTCGTCGAGGTGTTTCAGCTTTGATTTGAGGCACTGGACTGGCTGAAATGGAGAACGGGAATGGCGTCAGTCGCTTCCCGTTTCCCTTTAAGCCGTATCCGATCCAGGAGCGCTTCATGGAGGCGCTGTACGCCGTGCTCGAGCAGGGCAAAGTGGGCATCTTCGAGAGCCCCACCGGCACGGGGAAGTCTCTGAGTCTGATCTGTGGTGCGCTGACATGGCTGAAAGACTGCGAGGAGAAGAAACGACAAGAAGCTGCCAAGCTCCTGGAGCACACAGTGAGCGCGAGGGCAGTAGGTGGAGGAGGAAAAGATGGGGACGGAATCACGGTTCAGGAGGAGGAAAAAGGGAGCAGCGCTGGTGCTGACGGAGAGCTGGACTGGGTTTCAGAGTTTGTGCAgaaaagagcagagagagagatggtgaacAAATTAAAGGACGAAGAGGTGAaaaggaagaggagagaggacCGACTGGAGATGATCAGACACAATGCTCAGCTTAAATACTCCATGAAGAGAAAAAACAGTGAGAATAGCGAGACTGAGAAGCTGCTGCAGTGCAGTAAGCAGGACGCAGGCTCAGAAGAAGGACCTAACGAAGACGACGAGGACGGGCTCGTTGTTGCGGATTATGAAAGCGATGAAGAAGTCACACCCaaaaacagGctctgtgatgatgatgatgatgatgatctggAGGAAGAGCACGTCACTAAGATTTATTACTGCAGCCGTACACACTCACAGCTGGCCCAGTTCGTGCATGAAGTGCAGAAGAGTCCGTATAGCTCCACGGTCAGCTTGGTCAATCTCGGGTCTagacagAATCTGTGCATTAATCCAGAGGTGGCACGACTGGGGAGCGTTCAGCTGATCAACGATCGCTGTATGgagctgcaaaaaaataaacatgATAAGCAGAACAAGGTGGACTCGGAGCCTAAACGCCGCCGCGGTGCCATCAAAGCGACCTGCGCTTTCTCGGGCTACGAGAAGATGATGACGATGCGAGACGAGGTGCTGGCGAGCGTCAGAGACATAGAGCAGCTCGTGCAGCACGgccgagacacacacacctgcccttATTACAGCACACGGCTGGCTATTCCTGCAGCtcagGTGGTGGTGTTGCCGTATCAATCTCTCCTTCATGCTGCGACTCGCAAGGCGTCCGGGATCAAGCTGAAGGATCAGATCGTCATTATCGACGAGGCTCACAACCTCACGGACACGATCACGGCACTGCACAGCGCTGAGGTCAACGGAGCACAGCTGTGCAGGGCTCACTCACAGCTCTCTCAGTACTGTGACCGCTacagGAGCCGCTTGAAGGCCAAGAATCTGATGTATATCAAGCAAATCCTGTTTGTGCTAGAGGGACTTGTGCGCACTCTTGGAGGGAAGGTGGGCCTGAATCCTGTGACTCAGACCACTCAgtcagGAACCGAACTGTTAACCATTAATGACTTCCTGTTCAGAGCGCAGATAGACAACATCAACCTGTTCAAGGTTCAGAGATATTTTGAGAAGAGTCTGATCAGCAGGAAGttgTTTGGATTTTCTGAGAAGTATGAAGGGAGcggtgtaagcacacacacaagctctatGAATAAGGAGAATCACAGAACTGAAGGACTTGGACGCTTCTTGCAGGGCCTTCAGAGCAAAGCTACAGctcCTGTAGAGCCTCAGGGTTCAGTAGAAGACAGACCGATTATGGCGTCTCCTATGATGCTTGTGGAAAGCTTCCTTTTCGCTCTCACCAGCGCCAACAAAGATGGAAGAGTGGTGATGGAAAAACAAGCATGCCTGGCTCAGAGTAGTGTAAAGTTTCTCATGCTGAACGCAGCGGTTCATTTTGCACAAGTTCTCCAAGAATGCAGGGCCGTCGTAATCGCTGGGGGAACCATGCAGCCTGTCTCAGACTTTAAGGAGCAGCTTCTCCTTTCAGCTGGAGTTCCTAATGAGCGCATTGTAGAGTTTTCATGTgGTCATGTCATCCCTCCGGAGAATATTCTACCCATAATCCTCTGCACTGGACCGTCTGGACAGGAGCTGGAGTTTACCTTCCAGACCAGAGACACACCACAGAtgATGGAGGAGACGGGGCGTGTTCTGTCCAACCTGTGCAACGTGGTTCCAGGAGGCGTggtctgttttttcccctcctatGAGTACGAGAGGAGAATTCTGGGACACTGGGAGAGTAACGGAGTCCTCCAACGACTTGCAGCCAAAAAGAAGATTTTCCAGGAACCAAAGAAAGCGAGTCAGGTGGAGCAAGTGCTGTCTGAGTACTCCAAGTGCATCCAGCGCTGCATCAATACTGGAGGCAGCCAGTCGGGGGCGCTGTTATTCTCTGTGGTTGGAGGAAAGATGAGTGAAGGGATTAACTTCTCAGATGATCTGGGCAGaTGTATTGTGATGGTCGGAATGCCGTACCCCAACATTAAGTCCCCTGAACTTCAGGAGAAAATGGCGTATTTAGATAAGCACATGCCTCTTGTGGATGGCAGAAGTCCAGGGAAGGCTTTAATCGAAAACCTGTGCATGAAGGCTGTTAACCAGTCAATAGGCCGGGCGATTCGTCACAGGGGTGATTATGCCTGTATCGTGTTGTGTGACCGGCGCTACGCCCGCACTGGCACACTGCAGAAACTTCCGGAGTGGATCCGAAGCAGCACAAGCACTCACAGCAACTTCGGGCCGGCCTTCGCCAGCATCAGGAAGTTTTTCCTGGAGAAGCGACAAACACAGCACTGAGCAGAAGCACACATGACCTCAAGTCTATATCTGTCCAGATTCaagttctgttttcttttttcttttaagaccCTGTGTGCATGTAGTTGTGTAATCCTGTAAAAGCcatgtaaataattaacattcCTCCTGTCCGTTTCTTCTGTGCTGGTTTTTCTGTGTTGAGTCCAACTCTGAAATTTGTACAACGTTCATGTGAGACTGTTACAgtttaatgtgaataaaatcaatataatgAGGTGAA
>XM_026914194.2
TGGCGCGGACCTTCAAGGAAGTTTAGTGCGAACAGCTGAAGTAGCTAAGCGGTCTTTCGTCGAGGTGTTTCAGCTTTGATTTGAGGCACTGGACTGGCTGAAATGGAGAACGGGAATGGCGTCAGTCGCTTCCCGTTTCCCTTTAAGCCGTATCCGATCCAGGAGCGCTTCATGGAGGCGCTGTACGCCGTGCTCGAGCAGGGCAAAGTGGGCATCTTCGAGAGCCCCACCGGCACGGGGAAGTCTCTGAGTCTGATCTGTGGTGCGCTGACATGGCTGAAAGACTGCGAGGAGAAGAAACGACAAGAAGCTGCCAAGCTCCTGGAGCACACAGTGAGCGCGAGGGCAGGTGGAGGAGGAAAAGATGGGGACGGAATCACGGTTCAGGAGGAGGAAAAAGGGAGCAGCGCTGGTGCTGACGGAGAGCTGGACTGGGTTTCAGAGTTTGTGCAgaaaagagcagagagagagatggtgaacAAATTAAAGGACGAAGAGGTGAaaaggaagaggagagaggacCGACTGGAGATGATCAGACACAATGCTCAGCTTAAATACTCCATGAAGAGAAAAAACAGTGAGAATAGCGAGACTGAGAAGCTGCTGCAGTGCAGTAAGCAGGACGCAGGCTCAGAAGAAGGACCTAACGAAGACGACGAGGACGGGCTCGTTGTTGCGGATTATGAAAGCGATGAAGAAGTCACACCCaaaaacagGctctgtgatgatgatgatgatgatgatctggAGGAAGAGCACGTCACTAAGATTTATTACTGCAGCCGTACACACTCACAGCTGGCCCAGTTCGTGCATGAAGTGCAGAAGAGTCCGTATAGCTCCACGGTCAGCTTGGTCAATCTCGGGTCTagacagAATCTGTGCATTAATCCAGAGGTGGCACGACTGGGGAGCGTTCAGCTGATCAACGATCGCTGTATGgagctgcaaaaaaataaacatgATAAGCAGAACAAGGTGGACTCGGAGCCTAAACGCCGCCGCGGTGCCATCAAAGCGACCTGCGCTTTCTCGGGCTACGAGAAGATGATGACGATGCGAGACGAGGTGCTGGCGAGCGTCAGAGACATAGAGCAGCTCGTGCAGCACGgccgagacacacacacctgcccttATTACAGCACACGGCTGGCTATTCCTGCAGCtcagGTGGTGGTGTTGCCGTATCAATCTCTCCTTCATGCTGCGACTCGCAAGGCGTCCGGGATCAAGCTGAAGGATCAGATCGTCATTATCGACGAGGCTCACAACCTCACGGACACGATCACGGCACTGCACAGCGCTGAGGTCAACGGAGCACAGCTGTGCAGGGCTCACTCACAGCTCTCTCAGTACTGTGACCGCTacagGAGCCGCTTGAAGGCCAAGAATCTGATGTATATCAAGCAAATCCTGTTTGTGCTAGAGGGACTTGTGCGCACTCTTGGAGGGAAGGTGGGCCTGAATCCTGTGACTCAGACCACTCAgtcagGAACCGAACTGTTAACCATTAATGACTTCCTGTTCAGAGCGCAGATAGACAACATCAACCTGTTCAAGGTTCAGAGATATTTTGAGAAGAGTCTGATCAGCAGGAAGttgTTTGGATTTTCTGAGAAGTATGAAGGGAGcggtgtaagcacacacacaagctctatGAATAAGGAGAATCACAGAACTGAAGGACTTGGACGCTTCTTGCAGGGCCTTCAGAGCAAAGCTACAGctcCTGTAGAGCCTCAGGGTTCAGTAGAAGACAGACCGATTATGGCGTCTCCTATGATGCTTGTGGAAAGCTTCCTTTTCGCTCTCACCAGCGCCAACAAAGATGGAAGAGTGGTGATGGAAAAACAAGCATGCCTGGCTCAGAGTAGTGTAAAGTTTCTCATGCTGAACGCAGCGGTTCATTTTGCACAAGTTCTCCAAGAATGCAGGGCCGTCGTAATCGCTGGGGGAACCATGCAGCCTGTCTCAGACTTTAAGGAGCAGCTTCTCCTTTCAGCTGGAGTTCCTAATGAGCGCATTGTAGAGTTTTCATGTgGTCATGTCATCCCTCCGGAGAATATTCTACCCATAATCCTCTGCACTGGACCGTCTGGACAGGAGCTGGAGTTTACCTTCCAGACCAGAGACACACCACAGAtgATGGAGGAGACGGGGCGTGTTCTGTCCAACCTGTGCAACGTGGTTCCAGGAGGCGTggtctgttttttcccctcctatGAGTACGAGAGGAGAATTCTGGGACACTGGGAGAGTAACGGAGTCCTCCAACGACTTGCAGCCAAAAAGAAGATTTTCCAGGAACCAAAGAAAGCGAGTCAGGTGGAGCAAGTGCTGTCTGAGTACTCCAAGTGCATCCAGCGCTGCATCAATACTGGAGGCAGCCAGTCGGGGGCGCTGTTATTCTCTGTGGTTGGAGGAAAGATGAGTGAAGGGATTAACTTCTCAGATGATCTGGGCAGaTGTATTGTGATGGTCGGAATGCCGTACCCCAACATTAAGTCCCCTGAACTTCAGGAGAAAATGGCGTATTTAGATAAGCACATGCCTCTTGTGGATGGCAGAAGTCCAGGGAAGGCTTTAATCGAAAACCTGTGCATGAAGGCTGTTAACCAGTCAATAGGCCGGGCGATTCGTCACAGGGGTGATTATGCCTGTATCGTGTTGTGTGACCGGCGCTACGCCCGCACTGGCACACTGCAGAAACTTCCGGAGTGGATCCGAAGCAGCACAAGCACTCACAGCAACTTCGGGCCGGCCTTCGCCAGCATCAGGAAGTTTTTCCTGGAGAAGCGACAAACACAGCACTGAGCAGAAGCACACATGACCTCAAGTCTATATCTGTCCAGATTCaagttctgttttcttttttcttttaagaccCTGTGTGCATGTAGTTGTGTAATCCTGTAAAAGCcatgtaaataattaacattcCTCCTGTCCGTTTCTTCTGTGCTGGTTTTTCTGTGTTGAGTCCAACTCTGAAATTTGTACAACGTTCATGTGAGACTGTTACAgtttaatgtgaataaaatcaatataatgAGGTGAA

Function

symbol description
ddx11 Predicted to enable DNA helicase activity. Acts upstream of or within nucleolar chromatin organization; rRNA transcription; and regulation of transcription of nucleolar large rRNA by RNA polymerase I. Predicted to be located in several cellular components, including microtubule cytoskeleton; midbody; and nucleolus. Predicted to be active in nucleus. Used to study Warsaw breakage syndrome. Human ortholog(s) of this gene implicated in Warsaw breakage syndrome. Orthologous to several human genes including DDX11 (DEAD/H-box helicase 11).

NR:

description
ATP-dependent DNA helicase DDX11 isoform X1

GO:

id name namespace
GO:0032508 DNA duplex unwinding biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11273 DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU125360 False 500 lncRNA 0.46 3 27543059 27545517
XM_026914193.2 True 3064 mRNA 0.51 27 27526123 27545526
XM_026914194.2 False 3061 mRNA 0.51 27 27526123 27545526

Neighbor

gene id symbol gene type direction distance location
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding upstream 397710 27120185 ~ 27128413 (+)
LOC113526836 LOC108264191,LOC108436995,LOC101161623 coding upstream 418552 27105466 ~ 27107571 (+)
si:dkey-205h23.2 celf6,LOC106535005 coding upstream 463062 26913328 ~ 27063061 (+)
LOC113526325 parp6 coding upstream 650791 26850962 ~ 26875332 (+)
dhdh.2 dhdh,LOC108431994 coding upstream 699101 26821167 ~ 26827022 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding downstream 12914 27558440 ~ 27600569 (+)
trnal-caa_8 NA coding downstream 13310 27558836 ~ 27558946 (+)
trnal-caa_9 NA coding downstream 14861 27560387 ~ 27560497 (+)
gcsha gcsh,LOC108421035 coding downstream 164650 27710176 ~ 27713570 (+)
nob1 nob1 coding downstream 301292 27846818 ~ 27854765 (+)
G105981 NA non-coding upstream 27493 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 291899 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 381092 27141845 ~ 27145031 (+)
G105841 NA non-coding upstream 396494 27129348 ~ 27129629 (+)
G105732 NA non-coding upstream 460100 27064691 ~ 27066023 (+)
G106064 NA non-coding downstream 56632 27602158 ~ 27602734 (+)
G106118 NA non-coding downstream 180876 27726402 ~ 27729161 (+)
G106343 NA non-coding downstream 552203 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 688281 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 844672 28390198 ~ 28450197 (+)
G105898 LOC108264731 other upstream 311553 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 692696 26830978 ~ 26833427 (+)
G104781 NA other upstream 2210910 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 2285910 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 3763078 23739502 ~ 23763045 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 399264 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 521356 28066882 ~ 28070685 (+)
def8 def8 other downstream 600737 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 1253938 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2848734 30394260 ~ 30498315 (+)

Expression


Co-expression Network