G106118


Basic Information

Item Value
gene id G106118
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27726402 ~ 27729161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125500
GGGCATCAGTGAGAGGaagggaggagagacagaaagagaaagagtcgTCAACCAGCTGCCATCACTAACAGAGAAGTGATTTGTGAGGTTGAATGATGGAAGGAAGTTGGCAAAAGTTCAAGgcACAGAGAACATATCCAGATTACTTCAGAATAGGCACTAGGAAGATGTTTTCATCTCTACGTCTGTCATCTCGTCTCTCAACACCTCCTCACATGGTCTGCGTAGCATCATGGTTCCCCTCCGCAACACGCTAATCGATATCTCTGGCACGTGGTGTGGTTGCATCCATAGGTATTTTTCTGCGCATGTTTGTGTTGGCACCTCACATTAGCACTTGCTAATGTTCGGCGGTGTGCCAGGATCTCCGCTGTGCCGTCTGGTGCCAGAATCATGGCATCGTTTCAAGAATGGCACAGTGCCAGCGTGTCTCCGCAGCGATGGCTCCTGACACGTGCTGCTTGGCAAAGACAAAGAGCCCGAGGgacaagaaacagaaaacaaaagagctACAAACACTCTGATCCGACAGCTTAATTAACACTGGTGGAGTTTGTTGGGTTAATTAGGGTGACAGATTTGGTCGTGATGGAGGAATGTAGCAGCAACGAGTGTGAGAATAAAAACGATGGGCGGATACAGATCAGTGAAGGAATGCCAGCAAATGCCAGGGCTGCGAGTCGAGCGGTGCCCTTGGCAGTCTGGTGCCAATGTTGTGTAGTGCGTACTTCGATAGAGGGATAATGCTGCATCATCGGCATCTCTGCATGATCTTGGCTCATGAAATCTGGAAACAGTTCTAAAAATGGGGGAGGAGACGAAAGCAACTGGGAGGAGAACCAGGAAGGCCTTGGAATTATTACATAAGAATGATTCAGCAATATGGAGCCATCATGTTGTAATGATTGaactcttctctttttttaaatattcaattgTCTTCTGTGATAGAACATACAAATGATTATCAAGAAACAGGATGGAGGGCATGGAAGATCTGGACAAATTAATCTCTTCAGGAGAACTGGAGTTACATTGGGACATCTACGAAGTTCTCTAGGTGTTCATCAGGGATAAACCCTCAACCGTGTGTTGTGAGACCAGAAGTCTTTGACCACCTGATGAACCTGTGCTTAGGGAAACAGCGTGAACATGTTGCCATTCGGAGATCCTCTGAGATCCTCACTCTGGATGTTTGACATGGCTTTGGTGTATGAATAAtgcacatttctttctctccccctatctctccatccttctctcaTCTCTGTACTCTCAAAAGGGAGGGATTACCAGATATTTGTGCTTCAATGTTAGGATGTTGCATTGGCATCACCTCCTCACTTCCATGGTTTGAGGGCAACGACTGTCAGAGGCGAACAATTTATTTTGGAATTTGCATTGTTTATCGATGAAACCCTGCTCAAGGCGACTCGAAAAACAGACATTAACGACCTCGTGAAATTAGCGAACTCATTCGTCATGCCtgaaatttcttttcttttttttaggtaaAGCGTTTGAGCAGGATTTAAGCGTGGATATGCTAATCTTGTCGCGTTAATGAGGTTTGGATCATCAGTGTTCTCGTCTCAGCTCGGTTGGGGATCTTAATTTCACCTCATCTTCATTATGCAAatggatttaaaagaaaaaaaatggaccaacAAAAAAGGAGGGTGCAGTCAAAAGAGAGACAACAGATAATTTAGGGAGAGAAGAAAATGGTGCTCAGAATGGTGGTTTTTATGCTCTGACTTGAAGCACAGGCGAATTTTTCTCGTCTACTCAGGAGTACCAACATGGAGGATGAACCCAGAGGATACTTGTGCTCTTTTTCCCCCCCTGGATACTACTGTTGCACCAGTTGTGTGATGAAGGGACAGAACAGAAGATGGAATTAACCAAATTAAAAGGAGGGAGAGAATGGTTAATATCCTGTGCTTAATCATCGCACATGAGATTGGCTGTATGCGTGTCTCATTTGCATCTCATTAAATTGCACCTGCTGAAAGGGGGAGGAGAGTGAAGCTGCTTTGGAATAGAAATAAGGGTTGTAACTAAAATGCATAATCTAAATTCACAACTGTGCTTGTTTTTGTCCACGTCAAATCAATTTTAGGGTCTTTATATTTGTTTGGGGCTCtgattattgtcattttttttttttggaagcccTAAAACCTGTGACATAAGATGTCTACTCTGTACAGTGCTTATGTAGAGGAAAAGAGTGATTTTTGCGTAATACAAAGAACAAAGATACCAAATCGTTTGCCTATAATCATATCAAGGTATGATCATTCCACATGAAATTTTATGTTAAGGAGATGTAAAACCCCTGATGTGTGGCTTGTGGCCACTGCTTTAATGTATGCATGATTAGTATGCAGCTCGGTGAGTTCTTTAATAGAAGTCCGGGTGAACACTATTGTCTCTAATACTAAAATGTGCCATCTGCCCGGCTGCTGAGGCTGGCCTTTCTCTTTTGTGATGAACACAATGGGCTATTCTGCAACTGGACGTCCACAcataactaaaataaatcatgCCTCGCTCTGCAGGCCTGAAACAACCAGCGCAAGGAAGGGAATCTGGTAAAGCATGTGACTCATGTAAACAATAGTGATGGTGATAATAAA

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU125500 True 2642 lncRNA 0.43 2 27726402 27729161

Neighbor

gene id symbol gene type direction distance location
gcsha gcsh,LOC108421035 coding upstream 12832 27710176 ~ 27713570 (+)
iqsec3b iqsec3b,iqsec3,LOC108263995,LOC108413205,LOC107735425 coding upstream 125833 27558440 ~ 27600569 (+)
trnal-caa_9 NA coding upstream 165905 27560387 ~ 27560497 (+)
trnal-caa_8 NA coding upstream 167456 27558836 ~ 27558946 (+)
LOC113526324 LOC108264777,LOC108432642,LOC103354310,LOC103046663,LOC105912624,LOC106562120 coding upstream 597989 27120185 ~ 27128413 (+)
nob1 nob1 coding downstream 117657 27846818 ~ 27854765 (+)
nip7 nip7 coding downstream 130867 27860028 ~ 27863418 (+)
LOC113526868 rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858 coding downstream 160600 27889761 ~ 27891260 (+)
pdpr pdpr coding downstream 173610 27902771 ~ 27918148 (+)
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding downstream 261403 27990564 ~ 28063149 (+)
G106064 NA non-coding upstream 123668 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 227772 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 492178 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 581371 27141845 ~ 27145031 (+)
G105841 NA non-coding upstream 596773 27129348 ~ 27129629 (+)
G106343 NA non-coding downstream 368568 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 504646 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 661037 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 700842 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 840309 28569470 ~ 28571760 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 180876 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 511832 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 892975 26830978 ~ 26833427 (+)
G104781 NA other upstream 2411189 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 2486189 25233625 ~ 25240213 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 215629 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 337721 28066882 ~ 28070685 (+)
def8 def8 other downstream 417102 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 1070303 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2665099 30394260 ~ 30498315 (+)

Expression


Co-expression Network