LOC113526832 (LOC108263905,LOC108435606,LOC105906450)


Basic Information

Item Value
gene id LOC113526832
gene name LOC108263905,LOC108435606,LOC105906450
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27944790 ~ 27966308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125656
GTGCgctgtagtgtgcagtgtgtgcacgGCCGCTATAAGGAGGAGGAGTGCTCCTGTCTCTGTGATGTAGGTTACGGAGGAGCGGAGTGTGCAGAGAAGCTGAGTTTCCCCCATCACAGCTGTGACATGCAGATCGATGGTAAATGTTTCATGGTGTCCTCTGAAGCTGAGACGTACTACACGGCCAAGCTGCGCTGTCAGAAAAGAGGAGGGATTCTGGCTCAAGTGCTCAATCAGAAGGTCCAGGATATCATGACCTTTTACCTCGGGCAGCTGGAGAACACCAACGAGGTCACGGACCCTGACTTCGAGACGCGCAACTTCTGGATAGGTTTGACGTATAAACCACTGAAAGACTCGTTCCGCTGGGACACAGGAGAAATCGCGACATTTACCAGCTTTGCTTTTGGACAGCCAGACAATCAGGGTTTTGGGAATTGTGTCGAGCTGCAAGCGTCCAGCGCCTTCAACTGGAACGACCAGCGCTGCAAAACTCGCAACAGATACATCTGCCAGTTCAG
>XM_026914227.2
TGGCGTGACGTCATCAGGACGGGGCACGAAGCTGGAGCGCGCGAGAGTAAccgggtgagtgagtgagtgagtgagtaacaCAGACCCTCACTCTTTATACCGTATGTTTGGAAACTTCTTACAGCCATGAGACCTCGGACAGGCCCGCAGAGTCCCGCTGCACTGCTCATCGTTTTATTTTCCGTGTTAAACACCTGCGCGAGCCGGACGATTAACGGAAAAAGACGAAGAGCCGATTCACCTGAGAGCGGATTTGGGGCGAAGGAGCGTTTTCAGATCGTTACACAACACAATCGACTGCGCAGTCGAGTCGAGCCCATGGCGGCGAACATGCAGAAAATGGAGTGGAGTGACACGCTGGCTGCACTGGCTCAGATAAGGGCTGAGTCCTGCTCAAAGAACAGCACTGGATCAGAAGTGGACACCGAGCACATCGGCTGGAACATCCATCAGTCTCCTCATGGTGTAGCCTCTTACTCTGACATCATCAACTCGTGGTTCCAGGAAGGGCATCACTACGTCTATCAAAACGGACAGTGCAAAAGCAACCACACCTGCAAGCATTACACACAGCTGGTGTGGGCCACGTCCAGTCAGGTGGGCTGTGCATTGCACCTGTGCAGAGTTGGAGTCAAACAATGGGACATGTTCGTGTGTGCATACTTTCCCGGGGGAAACTGGGAGGTGAACGGCCGGGAGGTGATGCCCTATAAATCAGGAGTGTACTGCTCTCTCTGCACGGCCTCCATGTCGGGGTGCTTTCGGCTCTGGGACCATGTTGGAGGCTTGTGTGaGACCCCTCGAAACCCGTGTCGTATGAGCTGTGGACAGTACGGACAGCTGAACGTCTCTTCGTGCCAGTGTCAGTGTAACCGCGGATTCACAGGCCGGTTCTGTCAGGTGCgctgtagtgtgcagtgtgtgcacgGCCGCTATAAGGAGGAGGAGTGCTCCTGTCTCTGTGATGTAGGTTACGGAGGAGCGGAGTGTGCAGAGAAGCTGAGTTTCCCCCATCACAGCTGTGACATGCAGATCGATGGTAAATGTTTCATGGTGTCCTCTGAAGCTGAGACGTACTACACGGCCAAGCTGCGCTGTCAGAAAAGAGGAGGGATTCTGGCTCAAGTGCTCAATCAGAAGGTCCAGGATATCATGACCTTTTACCTCGGGCAGCTGGAGAACACCAACGAGGTCACGGACCCTGACTTCGAGACGCGCAACTTCTGGATAGGTTTGACGTATAAACCACTGAAAGACTCGTTCCGCTGGGACACAGGAGAAATCGCGACATTTACCAGCTTTGCTTTTGGACAGCCAGACAATCAGGGTTTTGGGAATTGTGTCGAGCTGCAAGCGTCCAGCGCCTTCAACTGGAACGACCAGCGCTGCAAAACTCGCAACAGATACATCTGCCAGTTCAGTCCAGAGCACATTGCTCTGTGGGAGTTTGGGCAATGAGAGCTATGCTTCGTGACTGCTGCAGAAGATTACTGATCCACGGCTGCTGTTCTTCTGACTGGATTATGTGGTTTGAGCTCAGATGTAGGACTCCTGATCAATGCAGCCAGTATtgcataaggaataaaacatgtcaagGCATGCTGCtagaggaaaatgatcaacgaCGGGGTTGTATAGTGTGGCCTGACGTGCAGGGgcgttgattttttttccaatgacagcatgtcctgaagtattttattcctcttacaccacagcaacttgccagcgattgcatttttttatttattaaacattatgctgtaatttttatgtttatagttacatttaatgttgttgaacgtcCATGAAATGGGTTAGTTCTTGTTTTCACTTACGCAGACCTGCCATCCTTTATGTATTTGAATACATATATACGACATATGAATctaaaatgattgacagctgcatagctgttttgaactctctgatattaactgacaccccctggaagccccgcccccttcctcccATCTCaaatttgtcttgtttttatttttccgcTTGAAAGAATTGGCACGCTCGCTTTGTGTCAAGGTAAATGAGAATGTTTTGagatcattaaaatgaaataaaatctatcagtgtatttTCAGccaaagtttttattaaaagatgaAACAGGCTTACAATGAATTGTCACATCTAACGGTTTGCAAATacttttaatagtaataataattagaaagtgatcaAAAACGCTGCTTGTTCTCCTGCGCCAGTCAGCGCTCACGTGTTCAAACAGCATGGTCAAGCCCATTGTAGTTAAAACTAGAATGTGCATATATACAGGGTTGTACGGTAACCAGCAGGCACTAGAAATGCCGCTTATCTGCTTTAgttcagattagattagattagagttTTAGTGTCATTCTAGCAATATACAAGTTCACAGTAGGATGAACTAGCGCTCTTCAAGGCCTTGGTGCAATATTACAGAAAGTGACACAGTAAACACACCAGACAACATGTAGTGCGAAATTAGAAAAAGTGGCAGTGCACAATGGACAACAATGTACAATACAATATGTAGATGCTGAACCTCTATAATGAggacaatacaataaatacaacacaatacacaactGTGTTCATGcagatgtagacactagaaaatGGCATAATTgaaatttttttacaaaataaataa
>XR_003402810.2
TGGCGTGACGTCATCAGGACGGGGCACGAAGCTGGAGCGCGCGAGAGTAAccgggtgagtgagtgagtgagtgagtaacaCAGACCCTCACTCTTTATACCGTATGTTTGGAAACTTCTTACAGCCATGAGACCTCGGACAGGCCCGCAGAGTCCCGCTGCACTGCTCATCGTTTTATTTTCCGTGTTAAACACCTGCGCGAGCCGGACGATTAACGGAAAAAGACGAAGAGCCGATTCACCTGAGAGCGGATTTGGGGCGAAGGAGCGTTTTCAGATCGTTACACAACACAATCGACTGCGCAGTCGAGTCGAGCCCATGGCGGCGAACATGCAGAAAATGGAGTGGAGTGACACGCTGGCTGCACTGGCTCAGATAAGGGCTGAGTCCTGCTCAAAGAACAGCACTGGATCAGAAGTGGACACCGAGCACATCGGCTGGAACATCCATCAGTCTCCTCATGGTGTAGCCTCTTACTCTGACATCATCAACTCGTGGTTCCAGGAAGGGCATCACTACGTCTATCAAAACGGACAGTGCAAAAGCAACCACACCTGCAAGCATTACACACAGCTGGTGTGGGCCACGTCCAGTCAGGTGGGCTGTGCATTGCACCTGTGCAGAGTTGGAGTCAAACAATGGGACATGTTCGTGTGTGCATACTTTCCCGGGGGAAACTGGGAGGTGAACGGCCGGGAGGTGATGCCCTATAAATCAGGAGTGTACTGCTCTCTCTGCACGGCCTCCATGTCGGGGTGCTTTCGGCTCTGGGACCATGTTGGAGGCTTGTGTGaGACCCCTCGAAACCCGTGTCGTATGAGCTGTGGACAGTACGGACAGCTGAACGTCTCTTCGTGCCAGTGTCAGTGTAACCGCGGATTCACAGGCCGGTTCTGTCAGGTGCgctgtagtgtgcagtgtgtgcacgGCCGCTATAAGGAGGAGGAGTGCTCCTGTCTCTGTGATGTAGGTTACGGAGGAGCGGAGTGTGCAGAGAAGCTGAGTTTCCCCCATCACAGCTGTGACATGCAGATCGATGGTAAATGTTTCATGGTGTCCTCTGAAGCTGAGACGTACTACACGGCCAAGCTGCGCTGTCAGAAAAGAGGAGGGATTCTGGCTCAAGTGCTCAATCAGAAGGTCCAGGATATCATGACCTTTTACCTCGGGCAGCTGGAGAACACCAACGAGGTCACGGACCCTGACTTCGAGACGCGCAACTTCTGGATAGGTTTGACGTATAAACCACTGAAAGACTCGTTCCGCTGGGACACAGGAGAAATCGCGACATTTACCAGCTTTGCTTTTGGACAGCCAGACAATCAGGGTTTTGGGAATTGTGTCGAGCTGCAAGCGTCCAGCGCCTTCAACTGGAACGACCAGCGCTGCAAAACTCGCAACAGATACATCTGCCAGTTCAcagctgCAACATGCTCTCCAGAAAAGAGTGTATGAAAGCTTAGCAGAGAAGTGTGTAAAGATacacaaaataatcaacaagacATAGCAAGCAGTAATGAACAAGGTCCAGAGCACATTGCTCTGTGGGAGTTTGGGCAATGAGAGCTATGCTTCGTGACTGCTGCAGAAGATTACTGATCCACGGCTGCTGTTCTTCTGACTGGATTATGTGGTTTGAGCTCAGATGTAGGACTCCTGATCAATGCAGCCAGTATtgcataaggaataaaacatgtcaagGCATGCTGCtagaggaaaatgatcaacgaCGGGGTTGTATAGTGTGGCCTGACGTGCAGGGgcgttgattttttttccaatgacagcatgtcctgaagtattttattcctcttacaccacagcaacttgccagcgattgcatttttttatttattaaacattatgctgtaatttttatgtttatagttacatttaatgttgttgaacgtcCATGAAATGGGTTAGTTCTTGTTTTCACTTACGCAGACCTGCCATCCTTTATGTATTTGAATACATATATACGACATATGAATctaaaatgattgacagctgcatagctgttttgaactctctgatattaactgacaccccctggaagccccgcccccttcctcccATCTCaaatttgtcttgtttttatttttccgcTTGAAAGAATTGGCACGCTCGCTTTGTGTCAAGGTAAATGAGAATGTTTTGagatcattaaaatgaaataaaatctatcagtgtatttTCAGccaaagtttttattaaaagatgaAACAGGCTTACAATGAATTGTCACATCTAACGGTTTGCAAATacttttaatagtaataataattagaaagtgatcaAAAACGCTGCTTGTTCTCCTGCGCCAGTCAGCGCTCACGTGTTCAAACAGCATGGTCAAGCCCATTGTAGTTAAAACTAGAATGTGCATATATACAGGGTTGTACGGTAACCAGCAGGCACTAGAAATGCCGCTTATCTGCTTTAgttcagattagattagattagagttTTAGTGTCATTCTAGCAATATACAAGTTCACAGTAGGATGAACTAGCGCTCTTCAAGGCCTTGGTGCAATATTACAGAAAGTGACACAGTAAACACACCAGACAACATGTAGTGCGAAATTAGAAAAAGTGGCAGTGCACAATGGACAACAATGTACAATACAATATGTAGATGCTGAACCTCTATAATGAggacaatacaataaatacaacacaatacacaactGTGTTCATGcagatgtagacactagaaaatGGCATAATTgaaatttttttacaaaataaataa

Function

NR:

description
PREDICTED: C-type lectin domain family 18 member A-like isoform X1

GO: NA

KEGG:

id description
K22682 CLEC18; c-type lectin domain family 18

RNA

RNA id representative length rna type GC content exon number start site end site
TU125656 False 521 TUCP 0.53 5 27959525 27961771
XM_026914227.2 False 2653 mRNA 0.47 12 27944790 27966308
XR_003402810.2 True 2758 misc_RNA 0.46 13 27944790 27966308

Neighbor

gene id symbol gene type direction distance location
pdpr pdpr coding upstream 26642 27902771 ~ 27918148 (+)
LOC113526868 rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858 coding upstream 53530 27889761 ~ 27891260 (+)
nip7 nip7 coding upstream 81372 27860028 ~ 27863418 (+)
nob1 nob1 coding upstream 90025 27846818 ~ 27854765 (+)
gcsha gcsh,LOC108421035 coding upstream 231220 27710176 ~ 27713570 (+)
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding downstream 24256 27990564 ~ 28063149 (+)
pdcd5 pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235 coding downstream 105376 28071684 ~ 28078887 (+)
mvda mvd,LOC106562275 coding downstream 114689 28080997 ~ 28088425 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding downstream 123070 28089378 ~ 28095826 (+)
tcf25 tcf25,LOC106562269 coding downstream 132088 28098396 ~ 28114961 (+)
G106118 NA non-coding upstream 215629 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 342056 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 446160 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 710566 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 799759 27141845 ~ 27145031 (+)
G106343 NA non-coding downstream 131421 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 267499 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 423890 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 463695 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 603162 28569470 ~ 28571760 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 399264 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 730220 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1111363 26830978 ~ 26833427 (+)
G104781 NA other upstream 2629577 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 2704577 25233625 ~ 25240213 (+)
uraha LOC108264586,LOC108417536 other downstream 100574 28066882 ~ 28070685 (+)
def8 def8 other downstream 179955 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 833156 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2427952 30394260 ~ 30498315 (+)

Expression


Co-expression Network