uraha (LOC108264586,LOC108417536)


Basic Information

Item Value
gene id uraha
gene name LOC108264586,LOC108417536
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28066882 ~ 28070685 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU125683
TCTCCAAAAACAATCTACAGCGATTTTAAGGCGTTGTACAGTAACTGTAGCTTTGGATTGAGTGCTTCATCAACACTTCTTCATGCCATAAGGACACTGGGTGAAGGATAGAGAGGTCACTGACCTGCACTCCTCCTCCAGGCTGAATCCCggatacacacatgcacactgtacactGCTGCCAGAAAAGACAAGAAATACGCATGAGCACTAGATTGCAGCATATTAAAGATCATATTTTATCAGCAAAACAGTGTTCAGAAATGAGCGCTTTGCCACCGAGCCCGCTCACCACTCACGTGCTGAACACCGGCCGGGGTGTACCAGCTGCCAGCATGAGCATCACTCTGTACTTCCTGGATCCTACGACGTCAGCTTGGAACCATCTGACAACAGGAACTACCAACAGTGATGGACGTTGTCCAGGTCTCATCACTAGAGAAGCCTTCAGTGCTGGTACCTATAAGATGCGCTTTGAGACTGGACAGTACTGGGAGGGACTGGGGGAGAACTGCTTCTACCCGTATGTTGAGATTGTCTTCACCATCGCTGATGCTTCTCAGAAGTTCCACATCCCACTGCTCCTGAGTCGCTTTTCATACAGCACCTACAGGGGGAGCTAACAAGTGCAGGGACCAAACTGATTCACACTGATTCACACTGACCTCCACTGATCTGCCTGATCCTGATGTCTGGCTGAAGGTGCACCTATAAGCTCATCTACACGTGAAAAATAACGCTTATTGCTCTTACACCTCTGTTACAGGTCACTTACAATGGCTCAGTTGTATGAAAATGCACAATATGCACAAAGCGTAATATAAAACTACAGGTCAGTGTtgttatatatttctgtttctgtcctaCCTGACTGTCCTATTTACTAATATGTCctgaagtaaaataaatgtttcagctgaTGTGATGGACGGAAAAAGTTACATAGCAAAATAATGTGtacattaaagaaaacaattgCGAGTACAACAGCAGGTTATTATCTCCATTCCCACAGCCAGGCAGTCTAAGGGCTCTTGTGTTTGAAGCTTTGGGGTTAAATTACAGTACCAATGTAATTTCTGCAATTATTAAACAAACTTAGCACAAACATCTGCAGTAATGTGGTAATGTAAAagagaattgttttattttgtgtctaTTTCCC
>XM_026914079.2
TGATGACTCTCTACTTCCTGATTTTCAAGTTCTCCAAAAACAATCTACAGCGATTTTAAGGCGTTGTACAGTAACTGTAGCTTTGGATTGAGTGCTTCATCAACACTTCTTCATGCCATAAGGACACTGGGTGAAGGATAGAGAGGTCACTGACCTGCACTCCTCCTCCAGGCTGAATCCCggatacacacatgcacactgtacactGCTGCCAGAAAAGACAAGAAATACGCATGAGCACTAGATTGCAGCATATTAAAGATCATATTTTATCAGCAAAACAGTGTTCAGAAATGAGCGCTTTGCCACCGAGCCCGCTCACCACTCACGTGCTGAACACCGGCCGGGGTGTACCAGCTGCCAGCATGAGCATCACTCTGTACTTCCTGGATCCTACGACGTCAGCTTGGAACCATCTGACAACAGGAACTACCAACAGTGATGGACGTTGTCCAGGTCTCATCACTAGAGAAGCCTTCAGTGCTGGTACCTATAAGATGCGCTTTGAGACTGGACAGTACTGGGAGGGACTGGGGGAGAACTGCTTCTACCCGTATGTTGAGATTGTCTTCACCATCGCTGATGCTTCTCAGAAGTTCCACATCCCACTGCTCCTGAGTCGCTTTTCATACAGCACCTACAGGGGGAGCTAACAAGTGCAGGGACCAAACTGATTCACACTGATTCACACTGACCTCCACTGATCTGCCTGATCCTGATGTCTGGCTGAAGGTGCACCTATAAGCTCATCTACACGTGAAAAATAACGCTTATTGCTCTTACACCTCTGTTACAGGTCACTTACAATGGCTCAGTTGTATGAAAATGCACAATATGCACAAAGCGTAATATAAAACTACAGGTCAGTGTtgttatatatttctgtttctgtcctaCCTGACTGTCCTATTTACTAATATGTCctgaagtaaaataaatgtttcagctgaTGTGATGGACGGAAAAAGTTACATAGCAAAATAATGTGtacattaaagaaaacaattgCGAGTACAACAGCAGGTTATTATCTCCATTCCCACAGCCAGGCAGTCTAAGGGCTCTTGTGTTTGAAGCTTTGGGGTTAAATTACAGTACCAATGTAATTTCTGCAATTATTAAACAAACTTAGCACAAA
>XM_026914080.2
ATTTTCAAGTTCTCCAAAAACAATCTACAGCGATTTTAAGGCGTTGTACAGTAACTGTAGCTTTGGATTGAGTGCTTCATCAACACTTCTTCATGCCATAAGGACACTGGGTGAAGGATAGAGAGGTCACTGACCTGCACTCCTCCTCCAGGCTGAATCCCggatacacacatgcacactgtacactTGTTCAGAAATGAGCGCTTTGCCACCGAGCCCGCTCACCACTCACGTGCTGAACACCGGCCGGGGTGTACCAGCTGCCAGCATGAGCATCACTCTGTACTTCCTGGATCCTACGACGTCAGCTTGGAACCATCTGACAACAGGAACTACCAACAGTGATGGACGTTGTCCAGGTCTCATCACTAGAGAAGCCTTCAGTGCTGGTACCTATAAGATGCGCTTTGAGACTGGACAGTACTGGGAGGGACTGGGGGAGAACTGCTTCTACCCGTATGTTGAGATTGTCTTCACCATCGCTGATGCTTCTCAGAAGTTCCACATCCCACTGCTCCTGAGTCGCTTTTCATACAGCACCTACAGGGGGAGCTAACAAGTGCAGGGACCAAACTGATTCACACTGATTCACACTGACCTCCACTGATCTGCCTGATCCTGATGTCTGGCTGAAGGTGCACCTATAAGCTCATCTACACGTGAAAAATAACGCTTATTGCTCTTACACCTCTGTTACAGGTCACTTACAATGGCTCAGTTGTATGAAAATGCACAATATGCACAAAGCGTAATATAAAACTACAGGTCAGTGTtgttatatatttctgtttctgtcctaCCTGACTGTCCTATTTACTAATATGTCctgaagtaaaataaatgtttcagctgaTGTGATGGACGGAAAAAGTTACATAGCAAAATAATGTGtacattaaagaaaacaattgCGAGTACAACAGCAGGTTATTATCTCCATTCCCACAGCCAGGCAGTCTAAGGGCTCTTGTGTTTGAAGCTTTGGGGTTAAATTACAGTACCAATGTAATTTCTGCAATTATTAAACAAACTTAGCACAAA
>XM_034305052.1
CCTGATTTTCAAGTTCTCCAAAAACAATCTACAGCGATTTTAAGGCGTTGTACAGTAACTGTAGCTTTGGATTGAGTGCTTCATCAACACTTCTTCATGCCATAAGGACACTGGGCTGAATCCCggatacacacatgcacactgtacactGCTGCCAGAAAAGACAAGAAATACGCATGAGCACTAGATTGCAGCATATTAAAGATCATATTTTATCAGCAAAACAGTGTTCAGAAATGAGCGCTTTGCCACCGAGCCCGCTCACCACTCACGTGCTGAACACCGGCCGGGGTGTACCAGCTGCCAGCATGAGCATCACTCTGTACTTCCTGGATCCTACGACGTCAGCTTGGAACCATCTGACAACAGGAACTACCAACAGTGATGGACGTTGTCCAGGTCTCATCACTAGAGAAGCCTTCAGTGCTGGTACCTATAAGATGCGCTTTGAGACTGGACAGTACTGGGAGGGACTGGGGGAGAACTGCTTCTACCCGTATGTTGAGATTGTCTTCACCATCGCTGATGCTTCTCAGAAGTTCCACATCCCACTGCTCCTGAGTCGCTTTTCATACAGCACCTACAGGGGGAGCTAACAAGTGCAGGGACCAAACTGATTCACACTGATTCACACTGACCTCCACTGATCTGCCTGATCCTGATGTCTGGCTGAAGGTGCACCTATAAGCTCATCTACACGTGAAAAATAACGCTTATTGCTCTTACACCTCTGTTACAGGTCACTTACAATGGCTCAGTTGTATGAAAATGCACAATATGCACAAAGCGTAATATAAAACTACAGGTCAGTGTtgttatatatttctgtttctgtcctaCCTGACTGTCCTATTTACTAATATGTCctgaagtaaaataaatgtttcagctgaTGTGATGGACGGAAAAAGTTACATAGCAAAATAATGTGtacattaaagaaaacaattgCGAGTACAACAGCAGGTTATTATCTCCATTCCCACAGCCAGGCAGTCTAAGGGCTCTTGTGTTTGAAGCTTTGGGGTTAAATTACAGTACCAATGTAATTTCTGCAATTATTAAACAAACTTAGCACAAA

Function

NR:

description
5-hydroxyisourate hydrolase-like

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0019628 urate catabolic process biological_process
GO:0006810 transport biological_process
GO:0005777 peroxisome cellular_component
GO:0033971 hydroxyisourate hydrolase activity molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125683 True 1165 TUCP 0.44 6 28066912 28070685
XM_026914079.2 False 1138 mRNA 0.44 6 28066882 28070628
XM_026914080.2 False 1041 mRNA 0.45 5 28066902 28070628
XM_034305052.1 False 1081 mRNA 0.44 6 28066898 28070628

Neighbor

gene id symbol gene type direction distance location
LOC113526465 LOC108263904,LOC103040524,LOC108435460 coding upstream 3733 27990564 ~ 28063149 (+)
pdpr pdpr coding upstream 148734 27902771 ~ 27918148 (+)
LOC113526868 rgs9bp,si:ch73-167i17.6,LOC107736378,LOC107601053,LOC107561069,LOC107705791,LOC107662858 coding upstream 175622 27889761 ~ 27891260 (+)
nip7 nip7 coding upstream 203464 27860028 ~ 27863418 (+)
nob1 nob1 coding upstream 212117 27846818 ~ 27854765 (+)
pdcd5 pdcd5,LOC106587385,LOC107550119,LOC107690755,LOC107571235 coding downstream 999 28071684 ~ 28078887 (+)
mvda mvd,LOC106562275 coding downstream 10312 28080997 ~ 28088425 (+)
LOC113526918 LOC108264585,LOC107550118,LOC107661987,LOC107698019,LOC107715044,LOC107571231 coding downstream 18693 28089378 ~ 28095826 (+)
tcf25 tcf25,LOC106562269 coding downstream 27711 28098396 ~ 28114961 (+)
mc1r tubb3,mc1r,LOC107662306,LOC107706122,LOC103037812 coding downstream 48339 28119024 ~ 28123920 (+)
G106118 NA non-coding upstream 337721 27726402 ~ 27729161 (+)
G106064 NA non-coding upstream 464148 27602158 ~ 27602734 (+)
G105981 NA non-coding upstream 568252 27498431 ~ 27498630 (+)
G105904 NA non-coding upstream 832658 27229784 ~ 27234224 (+)
G105855 NA non-coding upstream 921851 27141845 ~ 27145031 (+)
G106343 NA non-coding downstream 27044 28097729 ~ 28098001 (+)
LOC117597547 NA non-coding downstream 163122 28233807 ~ 28244868 (+)
G106477 NA non-coding downstream 319513 28390198 ~ 28450197 (+)
LOC113526961 NA non-coding downstream 359318 28430003 ~ 28448635 (+)
G106531 NA non-coding downstream 498785 28569470 ~ 28571760 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 100574 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 521356 27526123 ~ 27545526 (+)
G105898 LOC108264731 other upstream 852312 27211389 ~ 27214570 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other upstream 1233455 26830978 ~ 26833427 (+)
G104781 NA other upstream 2751669 25294899 ~ 25315213 (+)
def8 def8 other downstream 75578 28146263 ~ 28161869 (+)
cmc2 cmc2,LOC107711752 other downstream 728779 28799464 ~ 28804072 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 2323575 30394260 ~ 30498315 (+)

Expression


Co-expression Network